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The search result lists the genes found by the search function.
The show/hide columns function can be used to customize the columns in the search result list.
To refine the search results with specific criterias, use the "Fields". For more information and examples see the Search help.
Data for all genes included in the search result can be downloaded in different formats, links are found in the upper right corner of the search result page: XML - An XML-file with more extensive data (including antigen sequences, protein expression, transcriptomics data, external references and more (see XSD)) for up to 10000 genes. RDF - Structured nanopublication data for the tissue annotations TSV - Tab-separated file with a subset of the data available in the XML-file JSON - JSON formatted file with the same subset of the data available in the TSV-file Custom - Custom dataset defined by the user in TSV or JSON format. Useful if you only need some of the data columns available in the TSV/JSON format
1. Select data columns:i
Change the selections below to determine which columns to have in the final file. The ensembl gene id is always added to have a identifier present in the output.
A whole group can be selected/unselected as well as individual data columns by toggling the checkboxes.
Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available.
Antibodies used for immunohistochemistry (results presented in Tissue, Pathology and Brain Atlas) and immunocytochemistry/IF (results presented in Cell Atlas) assays. The assays are described in detail in Assays & annotation.
Reliability (IH)i
Reliability score, divided into Enhanced, Supported, Approved, or Uncertain, is evaluated in normal tissues and based on consistency between antibody staining pattern, available RNA-Seq and gene/protein characterization data, as well as similarity between independent antibodies targeting the same protein.
Reliability score, divided into Supported or Uncertain, is set for all genes and indicates the level of reliability of the analyzed protein expression pattern based on available protein/RNA/gene characterization data.
Reliability score, divided into Enhanced, Supported, Approved, or Uncertain, is evaluated in cell lines and based on consistency between antibody staining pattern, available RNA-Seq and gene/protein characterization data, as well as similarity between independent antibodies targeting the same protein.
Clicking one of the Downlod boxes will download a file in the corresponding format with the selected data columns for the genes shown in the search result.
The copy boxes will give you a link to the file if you want to share it or save for later as a reference.
Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available.
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Tissuei
The Tissue Atlas contains information regarding the expression profiles of human genes both on the mRNA and protein level. The protein expression data from 44 normal human tissue types is derived from antibody-based protein profiling using immunohistochemistry.
The green piechart indicates the level of reliability of the analyzed protein expression pattern based on available RNA-seq data, protein/gene characterization data and immunohistochemical data from one or several antibodies with non-overlapping epitopes.
Cell typei
The Cell Type Atlas describes the single cell type RNA expression based on scRNAseq of human tissues. The data also covers transcriptomics analysis of human blood and cultured cell lines.
Pathologyi
The Pathology Atlas contains mRNA and protein expression data from 17 different forms of human cancer. Correlation analyses based on mRNA expression levels of human genes in cancer tissue and the clinical outcome for almost 8000 cancer patients is presented in a gene-centric manner.
The green piechart indicates the level of reliability of the analyzed protein expression pattern in normal tissues based on available RNA-seq data, protein/gene characterization data and immunohistochemical data from one or several antibodies with non-overlapping epitopes.
Braini
The Brain Atlas describes gene expression in various regions of the human, mouse and pig brain, both on the mRNA and protein level.
Bloodi
The Blood Atlas contains single cell type RNA information covering various immune cells in the blood, e.g. B-cells and granulocytes. Analysis of the human secretome (including annotation of the genes predicted to be actively secreted to human blood) and proteins detected in human blood are also presented.
Celli
The Cell Atlas contains high-resolution images showing the subcellular distribution of proteins as well as the RNA sequencing data of various tissue culture cell lines.
The green piechart indicates the level of reliability of the detected protein localization based on available protein/gene characterization data and antibody validation level.
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The Human Protein Atlas project is funded
