Cell type atlas - RPL39 - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

RPL39

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	RPL39
Gene descriptionⁱ Full gene name according to HGNC.	Ribosomal protein L39
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	804 NX
Lung	804 NX

Alveolar cells type 2	1169 NX
Lung	1169 NX

B-cells	6063 NX
Liver	7593 NX
Kidney	6759 NX
Colon	1480 NX

Basal glandular cells	3953 NX
Prostate	3953 NX

Basal keratinocytes	6613 NX
Skin	6613 NX

Bipolar cells	185 NX
Eye	185 NX

Cardiomyocytes	560 NX
Heart muscle	560 NX

Cholangiocytes	2326 NX
Liver	2326 NX

Ciliated cells	839 NX
Lung	839 NX

Club cells	1666 NX
Lung	1666 NX

Collecting duct cells	890 NX
Kidney	890 NX

Cone photoreceptor cells	81 NX
Eye	81 NX

Cytotrophoblasts	3416 NX
Placenta	3416 NX

Distal tubular cells	1771 NX
Kidney	1771 NX

Ductal cells	2205 NX
Pancreas	2205 NX

Early spermatids	43 NX
Testis	43 NX

Endothelial cells	2937 NX
Skin	4352 NX
Liver	4322 NX
Testis	4040 NX
Placenta	2941 NX
Prostate	2937 NX
Pancreas	2156 NX
Eye	1004 NX
Lung	1001 NX
Heart muscle	263 NX

Enterocytes	1485 NX
Small intestine	3092 NX
Rectum	1558 NX
Colon	1274 NX

Erythroid cells	1752 NX
Liver	1752 NX

Exocrine glandular cells	5027 NX
Pancreas	5027 NX

Extravillous trophoblasts	5622 NX
Placenta	5622 NX

Fibroblasts	3159 NX
Skin	4150 NX
Placenta	3126 NX
Lung	3062 NX
Prostate	1531 NX
Heart muscle	318 NX

Glandular cells	2775 NX
Prostate	2775 NX

Granulocytes	1647 NX
Lung	2348 NX
Colon	946 NX

Hepatocytes	4948 NX
Liver	4948 NX

Hofbauer cells	3424 NX
Placenta	3424 NX

Horizontal cells	76 NX
Eye	76 NX

Intestinal endocrine cells	2341 NX
Rectum	3646 NX
Colon	1036 NX

Ito cells	4015 NX
Liver	4015 NX

Kupffer cells	7006 NX
Liver	7006 NX

Late spermatids	130 NX
Testis	130 NX

Leydig cells	5526 NX
Testis	5526 NX

Macrophages	4347 NX
Skin	6727 NX
Testis	6216 NX
Kidney	4765 NX
Prostate	3929 NX
Lung	2216 NX
Pancreas	1816 NX

Melanocytes	3659 NX
Skin	3659 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	2663 NX
Pancreas	2663 NX

Mucus-secreting cells	4868 NX
Rectum	8959 NX
Small intestine	4138 NX
Colon	2151 NX

Muller glia cells	365 NX
Eye	365 NX

Pancreatic endocrine cells	4111 NX
Pancreas	4111 NX

Paneth cells	4990 NX
Rectum	7290 NX
Small intestine	4990 NX
Colon	1730 NX

Peritubular cells	2078 NX
Testis	2078 NX

Proximal tubular cells	2639 NX
Kidney	2639 NX

Rod photoreceptor cells	265 NX
Eye	265 NX

Sertoli cells	1475 NX
Testis	1475 NX

Smooth muscle cells	2147 NX
Skin	4210 NX
Pancreas	2147 NX
Prostate	1944 NX
Heart muscle	233 NX

Spermatocytes	31 NX
Testis	31 NX

Spermatogonia	206 NX
Testis	206 NX

Suprabasal keratinocytes	7589 NX
Skin	7589 NX

Syncytiotrophoblasts	3860 NX
Placenta	3860 NX

T-cells	3990 NX
Skin	7356 NX
Kidney	4741 NX
Liver	4607 NX
Prostate	3434 NX
Lung	2362 NX
Colon	1236 NX

Undifferentiated cells	7029 NX
Rectum	7953 NX
Small intestine	7545 NX
Colon	1539 NX

Urothelial cells	3640 NX
Prostate	3640 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.