Cell type atlas - UBE2E2 - The Human Protein Atlas

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UBE2E2

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	UBE2E2
Gene descriptionⁱ Full gene name according to HGNC.	Ubiquitin conjugating enzyme E2 E2
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Group enriched (plasmacytoid DC, myeloid DC, non-classical monocyte, intermediate monocyte, classical monocyte, naive B-cell, memory B-cell)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	21 NX
Lung	21 NX

Alveolar cells type 2	10 NX
Lung	10 NX

B-cells	36 NX
Colon	52 NX
Kidney	45 NX
Liver	22 NX

Basal glandular cells	11 NX
Prostate	11 NX

Basal keratinocytes	23 NX
Skin	23 NX

Bipolar cells	23 NX
Eye	23 NX

Cardiomyocytes	33 NX
Heart muscle	33 NX

Cholangiocytes	20 NX
Liver	20 NX

Ciliated cells	5 NX
Lung	5 NX

Club cells	5 NX
Lung	5 NX

Collecting duct cells	30 NX
Kidney	30 NX

Cone photoreceptor cells	16 NX
Eye	16 NX

Cytotrophoblasts	28 NX
Placenta	28 NX

Distal tubular cells	58 NX
Kidney	58 NX

Ductal cells	12 NX
Pancreas	12 NX

Early spermatids	18 NX
Testis	18 NX

Endothelial cells	20 NX
Prostate	68 NX
Skin	39 NX
Eye	28 NX
Pancreas	25 NX
Lung	20 NX
Liver	20 NX
Testis	13 NX
Placenta	12 NX
Heart muscle	11 NX

Enterocytes	0 NX
Colon	1 NX
Rectum	0 NX
Small intestine	0 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	26 NX
Pancreas	26 NX

Extravillous trophoblasts	34 NX
Placenta	34 NX

Fibroblasts	29 NX
Skin	61 NX
Prostate	60 NX
Heart muscle	29 NX
Lung	28 NX
Placenta	25 NX

Glandular cells	47 NX
Prostate	47 NX

Granulocytes	0 NX
Colon	0 NX
Lung	0 NX

Hepatocytes	38 NX
Liver	38 NX

Hofbauer cells	45 NX
Placenta	45 NX

Horizontal cells	30 NX
Eye	30 NX

Intestinal endocrine cells	2 NX
Colon	3 NX
Rectum	0 NX

Ito cells	15 NX
Liver	15 NX

Kupffer cells	44 NX
Liver	44 NX

Late spermatids	12 NX
Testis	12 NX

Leydig cells	37 NX
Testis	37 NX

Macrophages	55 NX
Kidney	69 NX
Skin	61 NX
Testis	57 NX
Pancreas	56 NX
Prostate	48 NX
Lung	40 NX

Melanocytes	74 NX
Skin	74 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	35 NX
Pancreas	35 NX

Mucus-secreting cells	1 NX
Rectum	2 NX
Colon	1 NX
Small intestine	0 NX

Muller glia cells	11 NX
Eye	11 NX

Pancreatic endocrine cells	14 NX
Pancreas	14 NX

Paneth cells	0 NX
Colon	3 NX
Rectum	0 NX
Small intestine	0 NX

Peritubular cells	50 NX
Testis	50 NX

Proximal tubular cells	98 NX
Kidney	98 NX

Rod photoreceptor cells	3 NX
Eye	3 NX

Sertoli cells	32 NX
Testis	32 NX

Smooth muscle cells	51 NX
Skin	63 NX
Heart muscle	61 NX
Prostate	51 NX
Pancreas	49 NX

Spermatocytes	34 NX
Testis	34 NX

Spermatogonia	99 NX
Testis	99 NX

Suprabasal keratinocytes	37 NX
Skin	37 NX

Syncytiotrophoblasts	32 NX
Placenta	32 NX

T-cells	3 NX
Lung	16 NX
Skin	8 NX
Kidney	5 NX
Liver	2 NX
Colon	1 NX
Prostate	0 NX

Undifferentiated cells	1 NX
Small intestine	2 NX
Rectum	0 NX
Colon	0 NX

Urothelial cells	5 NX
Prostate	5 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.