Cell type atlas - OXSR1 - The Human Protein Atlas

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OXSR1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	OXSR1
Gene descriptionⁱ Full gene name according to HGNC.	Oxidative stress responsive 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Urothelial cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Urothelial cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	12 NX
Lung	12 NX

Alveolar cells type 2	26 NX
Lung	26 NX

B-cells	13 NX
Colon	30 NX
Liver	13 NX
Kidney	9 NX

Basal glandular cells	24 NX
Prostate	24 NX

Basal keratinocytes	39 NX
Skin	39 NX

Bipolar cells	12 NX
Eye	12 NX

Cardiomyocytes	27 NX
Heart muscle	27 NX

Cholangiocytes	3 NX
Liver	3 NX

Ciliated cells	12 NX
Lung	12 NX

Club cells	27 NX
Lung	27 NX

Collecting duct cells	26 NX
Kidney	26 NX

Cone photoreceptor cells	20 NX
Eye	20 NX

Cytotrophoblasts	9 NX
Placenta	9 NX

Distal tubular cells	17 NX
Kidney	17 NX

Ductal cells	25 NX
Pancreas	25 NX

Early spermatids	3 NX
Testis	3 NX

Endothelial cells	17 NX
Heart muscle	25 NX
Testis	20 NX
Lung	18 NX
Skin	17 NX
Prostate	17 NX
Liver	14 NX
Placenta	14 NX
Pancreas	7 NX
Eye	5 NX

Enterocytes	29 NX
Colon	53 NX
Rectum	26 NX
Small intestine	25 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	13 NX
Pancreas	12 NX

Extravillous trophoblasts	16 NX
Placenta	16 NX

Fibroblasts	15 NX
Lung	46 NX
Heart muscle	23 NX
Prostate	16 NX
Skin	16 NX
Placenta	7 NX

Glandular cells	45 NX
Prostate	45 NX

Granulocytes	15 NX
Lung	21 NX
Colon	9 NX

Hepatocytes	18 NX
Liver	18 NX

Hofbauer cells	13 NX
Placenta	13 NX

Horizontal cells	21 NX
Eye	21 NX

Intestinal endocrine cells	23 NX
Rectum	33 NX
Colon	14 NX

Ito cells	12 NX
Liver	12 NX

Kupffer cells	33 NX
Liver	33 NX

Late spermatids	1 NX
Testis	1 NX

Leydig cells	9 NX
Testis	9 NX

Macrophages	28 NX
Prostate	51 NX
Skin	50 NX
Lung	46 NX
Kidney	29 NX
Testis	24 NX
Pancreas	7 NX

Melanocytes	7 NX
Skin	7 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	33 NX
Pancreas	33 NX

Mucus-secreting cells	18 NX
Colon	31 NX
Rectum	19 NX
Small intestine	15 NX

Muller glia cells	8 NX
Eye	8 NX

Pancreatic endocrine cells	34 NX
Pancreas	34 NX

Paneth cells	25 NX
Colon	37 NX
Small intestine	25 NX
Rectum	17 NX

Peritubular cells	12 NX
Testis	12 NX

Proximal tubular cells	19 NX
Kidney	19 NX

Rod photoreceptor cells	6 NX
Eye	6 NX

Sertoli cells	13 NX
Testis	13 NX

Smooth muscle cells	27 NX
Heart muscle	29 NX
Prostate	27 NX
Skin	23 NX
Pancreas	23 NX

Spermatocytes	13 NX
Testis	13 NX

Spermatogonia	15 NX
Testis	15 NX

Suprabasal keratinocytes	45 NX
Skin	45 NX

Syncytiotrophoblasts	28 NX
Placenta	28 NX

T-cells	18 NX
Colon	37 NX
Skin	30 NX
Prostate	22 NX
Liver	15 NX
Lung	14 NX
Kidney	12 NX

Undifferentiated cells	15 NX
Colon	22 NX
Rectum	15 NX
Small intestine	15 NX

Urothelial cells	110 NX
Prostate	110 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.