Cell type atlas - RPS7 - The Human Protein Atlas

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RPS7

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	RPS7
Gene descriptionⁱ Full gene name according to HGNC.	Ribosomal protein S7
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	8

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	462 NX
Lung	462 NX

Alveolar cells type 2	612 NX
Lung	612 NX

B-cells	3583 NX
Kidney	3792 NX
Liver	3583 NX
Colon	1166 NX

Basal glandular cells	3530 NX
Prostate	3530 NX

Basal keratinocytes	3485 NX
Skin	3485 NX

Bipolar cells	366 NX
Eye	366 NX

Cardiomyocytes	144 NX
Heart muscle	144 NX

Cholangiocytes	1480 NX
Liver	1480 NX

Ciliated cells	812 NX
Lung	812 NX

Club cells	1235 NX
Lung	1235 NX

Collecting duct cells	614 NX
Kidney	614 NX

Cone photoreceptor cells	306 NX
Eye	306 NX

Cytotrophoblasts	3079 NX
Placenta	3079 NX

Distal tubular cells	2208 NX
Kidney	2208 NX

Ductal cells	1634 NX
Pancreas	1634 NX

Early spermatids	1149 NX
Testis	1149 NX

Endothelial cells	1675 NX
Prostate	3559 NX
Testis	2538 NX
Skin	2462 NX
Placenta	2424 NX
Liver	1675 NX
Pancreas	1569 NX
Eye	837 NX
Lung	808 NX
Heart muscle	147 NX

Enterocytes	682 NX
Small intestine	1063 NX
Rectum	620 NX
Colon	597 NX

Erythroid cells	724 NX
Liver	724 NX

Exocrine glandular cells	2971 NX
Pancreas	2971 NX

Extravillous trophoblasts	4852 NX
Placenta	4852 NX

Fibroblasts	1819 NX
Placenta	2529 NX
Lung	1981 NX
Prostate	1819 NX
Skin	1472 NX
Heart muscle	150 NX

Glandular cells	2622 NX
Prostate	2622 NX

Granulocytes	1119 NX
Lung	1486 NX
Colon	753 NX

Hepatocytes	1215 NX
Liver	1215 NX

Hofbauer cells	2053 NX
Placenta	2053 NX

Horizontal cells	134 NX
Eye	134 NX

Intestinal endocrine cells	1203 NX
Rectum	1498 NX
Colon	907 NX

Ito cells	1662 NX
Liver	1662 NX

Kupffer cells	2170 NX
Liver	2170 NX

Late spermatids	372 NX
Testis	372 NX

Leydig cells	2711 NX
Testis	2711 NX

Macrophages	2470 NX
Testis	3261 NX
Prostate	3218 NX
Skin	2689 NX
Kidney	2406 NX
Lung	1087 NX
Pancreas	884 NX

Melanocytes	1898 NX
Skin	1898 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	2611 NX
Pancreas	2611 NX

Mucus-secreting cells	1832 NX
Rectum	3216 NX
Colon	1585 NX
Small intestine	1241 NX

Muller glia cells	516 NX
Eye	516 NX

Pancreatic endocrine cells	2629 NX
Pancreas	2629 NX

Paneth cells	1420 NX
Rectum	2522 NX
Small intestine	1420 NX
Colon	818 NX

Peritubular cells	1644 NX
Testis	1644 NX

Proximal tubular cells	3007 NX
Kidney	3007 NX

Rod photoreceptor cells	556 NX
Eye	556 NX

Sertoli cells	1429 NX
Testis	1429 NX

Smooth muscle cells	2160 NX
Prostate	2498 NX
Skin	2404 NX
Pancreas	2017 NX
Heart muscle	190 NX

Spermatocytes	1062 NX
Testis	1062 NX

Spermatogonia	775 NX
Testis	775 NX

Suprabasal keratinocytes	4415 NX
Skin	4415 NX

Syncytiotrophoblasts	3108 NX
Placenta	3108 NX

T-cells	2545 NX
Skin	3359 NX
Kidney	3238 NX
Prostate	2545 NX
Liver	2247 NX
Lung	1471 NX
Colon	1036 NX

Undifferentiated cells	2502 NX
Rectum	3005 NX
Small intestine	2502 NX
Colon	1250 NX

Urothelial cells	3300 NX
Prostate	3300 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.