Cell type atlas - CRYL1 - The Human Protein Atlas

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CRYL1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CRYL1
Gene descriptionⁱ Full gene name according to HGNC.	Crystallin lambda 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Proximal tubular cells, Distal tubular cells, Hepatocytes)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (OE19)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Proximal tubular cells, Distal tubular cells, Hepatocytes)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	6 NX
Lung	6 NX

Alveolar cells type 2	6 NX
Lung	6 NX

B-cells	20 NX
Kidney	54 NX
Liver	19 NX
Colon	12 NX

Basal glandular cells	13 NX
Prostate	13 NX

Basal keratinocytes	9 NX
Skin	9 NX

Bipolar cells	5 NX
Eye	5 NX

Cardiomyocytes	10 NX
Heart muscle	10 NX

Cholangiocytes	48 NX
Liver	48 NX

Ciliated cells	11 NX
Lung	11 NX

Club cells	7 NX
Lung	7 NX

Collecting duct cells	73 NX
Kidney	73 NX

Cone photoreceptor cells	12 NX
Eye	12 NX

Cytotrophoblasts	18 NX
Placenta	18 NX

Distal tubular cells	411 NX
Kidney	411 NX

Ductal cells	22 NX
Pancreas	21 NX

Early spermatids	3 NX
Testis	3 NX

Endothelial cells	24 NX
Liver	56 NX
Pancreas	39 NX
Placenta	29 NX
Eye	29 NX
Testis	24 NX
Skin	21 NX
Prostate	18 NX
Heart muscle	16 NX
Lung	9 NX

Enterocytes	181 NX
Small intestine	448 NX
Rectum	130 NX
Colon	86 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	28 NX
Pancreas	28 NX

Extravillous trophoblasts	9 NX
Placenta	9 NX

Fibroblasts	16 NX
Skin	43 NX
Prostate	16 NX
Placenta	11 NX
Lung	11 NX
Heart muscle	8 NX

Glandular cells	24 NX
Prostate	24 NX

Granulocytes	24 NX
Lung	30 NX
Colon	18 NX

Hepatocytes	273 NX
Liver	273 NX

Hofbauer cells	59 NX
Placenta	59 NX

Horizontal cells	2 NX
Eye	2 NX

Intestinal endocrine cells	9 NX
Rectum	14 NX
Colon	3 NX

Ito cells	49 NX
Liver	49 NX

Kupffer cells	77 NX
Liver	77 NX

Late spermatids	3 NX
Testis	3 NX

Leydig cells	24 NX
Testis	24 NX

Macrophages	36 NX
Kidney	83 NX
Testis	46 NX
Skin	41 NX
Pancreas	37 NX
Prostate	35 NX
Lung	16 NX

Melanocytes	35 NX
Skin	35 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	12 NX
Pancreas	12 NX

Mucus-secreting cells	70 NX
Small intestine	112 NX
Rectum	69 NX
Colon	66 NX

Muller glia cells	94 NX
Eye	94 NX

Pancreatic endocrine cells	32 NX
Pancreas	32 NX

Paneth cells	153 NX
Small intestine	302 NX
Colon	153 NX
Rectum	145 NX

Peritubular cells	23 NX
Testis	23 NX

Proximal tubular cells	849 NX
Kidney	849 NX

Rod photoreceptor cells	11 NX
Eye	11 NX

Sertoli cells	19 NX
Testis	19 NX

Smooth muscle cells	12 NX
Skin	17 NX
Pancreas	12 NX
Prostate	11 NX
Heart muscle	8 NX

Spermatocytes	1 NX
Testis	1 NX

Spermatogonia	0 NX
Testis	0 NX

Suprabasal keratinocytes	8 NX
Skin	8 NX

Syncytiotrophoblasts	17 NX
Placenta	17 NX

T-cells	15 NX
Kidney	56 NX
Skin	23 NX
Prostate	18 NX
Colon	15 NX
Liver	14 NX
Lung	9 NX

Undifferentiated cells	79 NX
Small intestine	147 NX
Colon	79 NX
Rectum	62 NX

Urothelial cells	12 NX
Prostate	12 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.