Cell type atlas - PBRM1 - The Human Protein Atlas

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PBRM1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	PBRM1
Gene descriptionⁱ Full gene name according to HGNC.	Polybromo 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Cancer-related genes Disease related genes Transcription factors
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	17

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	39 NX
Lung	39 NX

Alveolar cells type 2	54 NX
Lung	54 NX

B-cells	20 NX
Colon	37 NX
Liver	17 NX
Kidney	5 NX

Basal glandular cells	31 NX
Prostate	31 NX

Basal keratinocytes	36 NX
Skin	36 NX

Bipolar cells	42 NX
Eye	42 NX

Cardiomyocytes	48 NX
Heart muscle	48 NX

Cholangiocytes	28 NX
Liver	28 NX

Ciliated cells	54 NX
Lung	54 NX

Club cells	39 NX
Lung	39 NX

Collecting duct cells	23 NX
Kidney	23 NX

Cone photoreceptor cells	45 NX
Eye	45 NX

Cytotrophoblasts	31 NX
Placenta	31 NX

Distal tubular cells	17 NX
Kidney	17 NX

Ductal cells	31 NX
Pancreas	31 NX

Early spermatids	29 NX
Testis	29 NX

Endothelial cells	40 NX
Pancreas	68 NX
Heart muscle	50 NX
Prostate	41 NX
Lung	41 NX
Testis	40 NX
Placenta	37 NX
Eye	35 NX
Skin	34 NX
Liver	32 NX

Enterocytes	25 NX
Rectum	37 NX
Colon	28 NX
Small intestine	18 NX

Erythroid cells	23 NX
Liver	23 NX

Exocrine glandular cells	40 NX
Pancreas	40 NX

Extravillous trophoblasts	29 NX
Placenta	29 NX

Fibroblasts	32 NX
Heart muscle	40 NX
Prostate	34 NX
Placenta	31 NX
Lung	31 NX
Skin	30 NX

Glandular cells	35 NX
Prostate	35 NX

Granulocytes	28 NX
Lung	37 NX
Colon	18 NX

Hepatocytes	37 NX
Liver	37 NX

Hofbauer cells	46 NX
Placenta	46 NX

Horizontal cells	29 NX
Eye	29 NX

Intestinal endocrine cells	34 NX
Colon	44 NX
Rectum	23 NX

Ito cells	35 NX
Liver	35 NX

Kupffer cells	63 NX
Liver	63 NX

Late spermatids	15 NX
Testis	15 NX

Leydig cells	32 NX
Testis	32 NX

Macrophages	47 NX
Kidney	59 NX
Lung	54 NX
Testis	49 NX
Pancreas	44 NX
Skin	39 NX
Prostate	30 NX

Melanocytes	46 NX
Skin	46 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	51 NX
Pancreas	51 NX

Mucus-secreting cells	31 NX
Small intestine	33 NX
Rectum	32 NX
Colon	29 NX

Muller glia cells	29 NX
Eye	29 NX

Pancreatic endocrine cells	43 NX
Pancreas	43 NX

Paneth cells	28 NX
Rectum	34 NX
Small intestine	28 NX
Colon	17 NX

Peritubular cells	55 NX
Testis	55 NX

Proximal tubular cells	14 NX
Kidney	14 NX

Rod photoreceptor cells	43 NX
Eye	43 NX

Sertoli cells	26 NX
Testis	26 NX

Smooth muscle cells	45 NX
Heart muscle	72 NX
Prostate	57 NX
Skin	36 NX
Pancreas	31 NX

Spermatocytes	42 NX
Testis	42 NX

Spermatogonia	33 NX
Testis	33 NX

Suprabasal keratinocytes	45 NX
Skin	45 NX

Syncytiotrophoblasts	43 NX
Placenta	43 NX

T-cells	34 NX
Lung	43 NX
Colon	39 NX
Kidney	38 NX
Skin	34 NX
Liver	29 NX
Prostate	22 NX

Undifferentiated cells	35 NX
Rectum	35 NX
Colon	35 NX
Small intestine	34 NX

Urothelial cells	33 NX
Prostate	33 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.