Cell type atlas - USP1 - The Human Protein Atlas

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USP1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	USP1
Gene descriptionⁱ Full gene name according to HGNC.	Ubiquitin specific peptidase 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Spermatocytes, Spermatogonia)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Spermatocytes, Spermatogonia)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	45 NX
Lung	45 NX

Alveolar cells type 2	26 NX
Lung	26 NX

B-cells	45 NX
Colon	51 NX
Kidney	40 NX
Liver	37 NX

Basal glandular cells	31 NX
Prostate	31 NX

Basal keratinocytes	55 NX
Skin	55 NX

Bipolar cells	44 NX
Eye	44 NX

Cardiomyocytes	30 NX
Heart muscle	30 NX

Cholangiocytes	20 NX
Liver	20 NX

Ciliated cells	56 NX
Lung	56 NX

Club cells	43 NX
Lung	43 NX

Collecting duct cells	16 NX
Kidney	16 NX

Cone photoreceptor cells	22 NX
Eye	22 NX

Cytotrophoblasts	31 NX
Placenta	31 NX

Distal tubular cells	17 NX
Kidney	17 NX

Ductal cells	26 NX
Pancreas	26 NX

Early spermatids	117 NX
Testis	117 NX

Endothelial cells	38 NX
Heart muscle	56 NX
Prostate	42 NX
Testis	42 NX
Lung	41 NX
Skin	40 NX
Liver	32 NX
Eye	29 NX
Pancreas	25 NX
Placenta	21 NX

Enterocytes	13 NX
Rectum	21 NX
Small intestine	17 NX
Colon	8 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	30 NX
Pancreas	30 NX

Extravillous trophoblasts	56 NX
Placenta	56 NX

Fibroblasts	38 NX
Lung	59 NX
Heart muscle	42 NX
Skin	38 NX
Prostate	38 NX
Placenta	22 NX

Glandular cells	45 NX
Prostate	45 NX

Granulocytes	27 NX
Lung	35 NX
Colon	18 NX

Hepatocytes	16 NX
Liver	16 NX

Hofbauer cells	27 NX
Placenta	27 NX

Horizontal cells	33 NX
Eye	33 NX

Intestinal endocrine cells	8 NX
Rectum	9 NX
Colon	7 NX

Ito cells	23 NX
Liver	23 NX

Kupffer cells	28 NX
Liver	28 NX

Late spermatids	53 NX
Testis	53 NX

Leydig cells	46 NX
Testis	46 NX

Macrophages	31 NX
Lung	39 NX
Kidney	34 NX
Skin	31 NX
Pancreas	30 NX
Testis	26 NX
Prostate	22 NX

Melanocytes	25 NX
Skin	25 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	53 NX
Pancreas	53 NX

Mucus-secreting cells	29 NX
Colon	31 NX
Small intestine	29 NX
Rectum	29 NX

Muller glia cells	48 NX
Eye	48 NX

Pancreatic endocrine cells	22 NX
Pancreas	22 NX

Paneth cells	7 NX
Rectum	25 NX
Small intestine	7 NX
Colon	3 NX

Peritubular cells	39 NX
Testis	39 NX

Proximal tubular cells	14 NX
Kidney	14 NX

Rod photoreceptor cells	78 NX
Eye	78 NX

Sertoli cells	52 NX
Testis	52 NX

Smooth muscle cells	48 NX
Heart muscle	48 NX
Pancreas	48 NX
Skin	46 NX
Prostate	30 NX

Spermatocytes	281 NX
Testis	281 NX

Spermatogonia	215 NX
Testis	215 NX

Suprabasal keratinocytes	56 NX
Skin	56 NX

Syncytiotrophoblasts	28 NX
Placenta	28 NX

T-cells	47 NX
Colon	74 NX
Lung	60 NX
Skin	53 NX
Kidney	47 NX
Liver	28 NX
Prostate	26 NX

Undifferentiated cells	30 NX
Small intestine	42 NX
Rectum	30 NX
Colon	24 NX

Urothelial cells	29 NX
Prostate	29 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.