Cell type atlas - RPL29 - The Human Protein Atlas

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RPL29

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	RPL29
Gene descriptionⁱ Full gene name according to HGNC.	Ribosomal protein L29
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	7

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	176 NX
Lung	176 NX

Alveolar cells type 2	330 NX
Lung	330 NX

B-cells	3393 NX
Kidney	3507 NX
Liver	3486 NX
Colon	1241 NX

Basal glandular cells	4368 NX
Prostate	4368 NX

Basal keratinocytes	3532 NX
Skin	3532 NX

Bipolar cells	218 NX
Eye	218 NX

Cardiomyocytes	72 NX
Heart muscle	72 NX

Cholangiocytes	1399 NX
Liver	1399 NX

Ciliated cells	311 NX
Lung	311 NX

Club cells	438 NX
Lung	438 NX

Collecting duct cells	675 NX
Kidney	675 NX

Cone photoreceptor cells	96 NX
Eye	96 NX

Cytotrophoblasts	2333 NX
Placenta	2332 NX

Distal tubular cells	1849 NX
Kidney	1849 NX

Ductal cells	1478 NX
Pancreas	1478 NX

Early spermatids	868 NX
Testis	868 NX

Endothelial cells	2041 NX
Prostate	3566 NX
Skin	2774 NX
Testis	2732 NX
Placenta	2318 NX
Liver	2041 NX
Pancreas	1175 NX
Eye	824 NX
Lung	301 NX
Heart muscle	59 NX

Enterocytes	1840 NX
Small intestine	2858 NX
Colon	1649 NX
Rectum	1017 NX

Erythroid cells	958 NX
Liver	958 NX

Exocrine glandular cells	3975 NX
Pancreas	3975 NX

Extravillous trophoblasts	4391 NX
Placenta	4391 NX

Fibroblasts	2113 NX
Skin	2192 NX
Placenta	2040 NX
Prostate	1704 NX
Lung	397 NX
Heart muscle	78 NX

Glandular cells	3132 NX
Prostate	3132 NX

Granulocytes	683 NX
Colon	817 NX
Lung	549 NX

Hepatocytes	1270 NX
Liver	1270 NX

Hofbauer cells	2074 NX
Placenta	2074 NX

Horizontal cells	102 NX
Eye	102 NX

Intestinal endocrine cells	1376 NX
Rectum	1784 NX
Colon	968 NX

Ito cells	1509 NX
Liver	1509 NX

Kupffer cells	2270 NX
Liver	2270 NX

Late spermatids	3390 NX
Testis	3390 NX

Leydig cells	3344 NX
Testis	3344 NX

Macrophages	2646 NX
Prostate	3821 NX
Testis	3380 NX
Skin	2871 NX
Kidney	2686 NX
Pancreas	880 NX
Lung	381 NX

Melanocytes	2104 NX
Skin	2104 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	1980 NX
Pancreas	1980 NX

Mucus-secreting cells	2585 NX
Rectum	3890 NX
Small intestine	2281 NX
Colon	2158 NX

Muller glia cells	359 NX
Eye	359 NX

Pancreatic endocrine cells	2991 NX
Pancreas	2991 NX

Paneth cells	2490 NX
Rectum	3217 NX
Small intestine	2490 NX
Colon	1949 NX

Peritubular cells	1489 NX
Testis	1489 NX

Proximal tubular cells	2639 NX
Kidney	2639 NX

Rod photoreceptor cells	288 NX
Eye	288 NX

Sertoli cells	1125 NX
Testis	1125 NX

Smooth muscle cells	2454 NX
Prostate	2694 NX
Skin	2675 NX
Pancreas	1818 NX
Heart muscle	77 NX

Spermatocytes	526 NX
Testis	526 NX

Spermatogonia	451 NX
Testis	451 NX

Suprabasal keratinocytes	4437 NX
Skin	4437 NX

Syncytiotrophoblasts	2053 NX
Placenta	2053 NX

T-cells	2520 NX
Skin	3042 NX
Kidney	2854 NX
Prostate	2537 NX
Liver	2270 NX
Colon	1036 NX
Lung	469 NX

Undifferentiated cells	3632 NX
Small intestine	3799 NX
Rectum	3706 NX
Colon	1490 NX

Urothelial cells	5133 NX
Prostate	5133 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.