Cell type atlas - SSU72 - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

SSU72

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	SSU72
Gene descriptionⁱ Full gene name according to HGNC.	SSU72 homolog, RNA polymerase II CTD phosphatase
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Late spermatids)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Late spermatids)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	27 NX
Lung	27 NX

Alveolar cells type 2	71 NX
Lung	71 NX

B-cells	137 NX
Liver	152 NX
Kidney	125 NX
Colon	124 NX

Basal glandular cells	122 NX
Prostate	122 NX

Basal keratinocytes	165 NX
Skin	165 NX

Bipolar cells	98 NX
Eye	98 NX

Cardiomyocytes	81 NX
Heart muscle	81 NX

Cholangiocytes	117 NX
Liver	117 NX

Ciliated cells	36 NX
Lung	36 NX

Club cells	38 NX
Lung	38 NX

Collecting duct cells	96 NX
Kidney	96 NX

Cone photoreceptor cells	20 NX
Eye	20 NX

Cytotrophoblasts	178 NX
Placenta	178 NX

Distal tubular cells	247 NX
Kidney	247 NX

Ductal cells	63 NX
Pancreas	63 NX

Early spermatids	202 NX
Testis	202 NX

Endothelial cells	95 NX
Skin	115 NX
Liver	108 NX
Testis	106 NX
Prostate	100 NX
Placenta	95 NX
Eye	67 NX
Heart muscle	64 NX
Pancreas	54 NX
Lung	35 NX

Enterocytes	177 NX
Small intestine	197 NX
Rectum	167 NX
Colon	114 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	93 NX
Pancreas	93 NX

Extravillous trophoblasts	189 NX
Placenta	189 NX

Fibroblasts	93 NX
Placenta	106 NX
Skin	96 NX
Prostate	92 NX
Heart muscle	83 NX
Lung	22 NX

Glandular cells	151 NX
Prostate	151 NX

Granulocytes	60 NX
Colon	64 NX
Lung	56 NX

Hepatocytes	124 NX
Liver	124 NX

Hofbauer cells	125 NX
Placenta	125 NX

Horizontal cells	107 NX
Eye	107 NX

Intestinal endocrine cells	136 NX
Colon	139 NX
Rectum	133 NX

Ito cells	91 NX
Liver	91 NX

Kupffer cells	152 NX
Liver	152 NX

Late spermatids	520 NX
Testis	520 NX

Leydig cells	97 NX
Testis	97 NX

Macrophages	118 NX
Kidney	202 NX
Testis	131 NX
Pancreas	122 NX
Prostate	117 NX
Skin	107 NX
Lung	55 NX

Melanocytes	159 NX
Skin	159 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	91 NX
Pancreas	91 NX

Mucus-secreting cells	138 NX
Colon	177 NX
Rectum	140 NX
Small intestine	125 NX

Muller glia cells	97 NX
Eye	97 NX

Pancreatic endocrine cells	79 NX
Pancreas	79 NX

Paneth cells	169 NX
Colon	222 NX
Rectum	169 NX
Small intestine	168 NX

Peritubular cells	81 NX
Testis	81 NX

Proximal tubular cells	259 NX
Kidney	259 NX

Rod photoreceptor cells	58 NX
Eye	58 NX

Sertoli cells	58 NX
Testis	58 NX

Smooth muscle cells	97 NX
Pancreas	133 NX
Skin	98 NX
Prostate	97 NX
Heart muscle	55 NX

Spermatocytes	81 NX
Testis	81 NX

Spermatogonia	147 NX
Testis	147 NX

Suprabasal keratinocytes	193 NX
Skin	193 NX

Syncytiotrophoblasts	205 NX
Placenta	205 NX

T-cells	117 NX
Kidney	187 NX
Liver	129 NX
Colon	121 NX
Skin	117 NX
Prostate	48 NX
Lung	48 NX

Undifferentiated cells	134 NX
Colon	193 NX
Small intestine	136 NX
Rectum	133 NX

Urothelial cells	130 NX
Prostate	130 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.