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RNA expression in the single cell type clusters identified in this tissue visualized by a UMAP plot (top) and a bar chart (bottom).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart below. Color-coding can be toggled between 2 options: 1) cell type color, which is based on cell type groups used in the Cell Type Atlas and 2) cluster color, which assigns a unique color to each cluster.
- The BAR CHART shows RNA expression (pTPM) in each cell type cluster. Hovering over the cluster name reveals pTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Cell Type Atlas and 2) cluster color, which assigns a unique color to each cluster.
The publication which the RNA data was retrieved from is indicated furthest down in this section. Read more about our analysis here: here
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Intensity
Interval
Hexagon
Scatter plot, all cells color scale - % of max
Scatter plot, all cells color scale - fixed intervals