Cell type atlas - B4GALT5 - The Human Protein Atlas

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B4GALT5

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	B4GALT5
Gene descriptionⁱ Full gene name according to HGNC.	Beta-1,4-galactosyltransferase 5
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Urothelial cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (neutrophil)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Urothelial cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	15 NX
Lung	15 NX

Alveolar cells type 2	45 NX
Lung	45 NX

B-cells	3 NX
Colon	12 NX
Kidney	5 NX
Liver	1 NX

Basal glandular cells	24 NX
Prostate	24 NX

Basal keratinocytes	17 NX
Skin	17 NX

Bipolar cells	6 NX
Eye	6 NX

Cardiomyocytes	15 NX
Heart muscle	15 NX

Cholangiocytes	31 NX
Liver	31 NX

Ciliated cells	24 NX
Lung	24 NX

Club cells	35 NX
Lung	35 NX

Collecting duct cells	35 NX
Kidney	35 NX

Cone photoreceptor cells	10 NX
Eye	10 NX

Cytotrophoblasts	19 NX
Placenta	19 NX

Distal tubular cells	2 NX
Kidney	2 NX

Ductal cells	28 NX
Pancreas	28 NX

Early spermatids	5 NX
Testis	4 NX

Endothelial cells	44 NX
Prostate	73 NX
Liver	70 NX
Lung	61 NX
Skin	52 NX
Placenta	44 NX
Testis	23 NX
Heart muscle	23 NX
Eye	12 NX
Pancreas	4 NX

Enterocytes	21 NX
Rectum	67 NX
Colon	27 NX
Small intestine	13 NX

Erythroid cells	23 NX
Liver	23 NX

Exocrine glandular cells	17 NX
Pancreas	17 NX

Extravillous trophoblasts	22 NX
Placenta	22 NX

Fibroblasts	24 NX
Skin	56 NX
Prostate	52 NX
Lung	21 NX
Placenta	16 NX
Heart muscle	10 NX

Glandular cells	42 NX
Prostate	41 NX

Granulocytes	84 NX
Colon	138 NX
Lung	30 NX

Hepatocytes	20 NX
Liver	20 NX

Hofbauer cells	22 NX
Placenta	22 NX

Horizontal cells	11 NX
Eye	11 NX

Intestinal endocrine cells	33 NX
Rectum	42 NX
Colon	24 NX

Ito cells	47 NX
Liver	47 NX

Kupffer cells	28 NX
Liver	28 NX

Late spermatids	5 NX
Testis	5 NX

Leydig cells	18 NX
Testis	18 NX

Macrophages	28 NX
Prostate	58 NX
Skin	48 NX
Kidney	42 NX
Lung	28 NX
Testis	9 NX
Pancreas	5 NX

Melanocytes	20 NX
Skin	20 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	9 NX
Pancreas	9 NX

Mucus-secreting cells	24 NX
Rectum	25 NX
Small intestine	21 NX
Colon	10 NX

Muller glia cells	5 NX
Eye	5 NX

Pancreatic endocrine cells	30 NX
Pancreas	30 NX

Paneth cells	29 NX
Colon	52 NX
Rectum	29 NX
Small intestine	11 NX

Peritubular cells	31 NX
Testis	31 NX

Proximal tubular cells	32 NX
Kidney	32 NX

Rod photoreceptor cells	5 NX
Eye	5 NX

Sertoli cells	26 NX
Testis	26 NX

Smooth muscle cells	27 NX
Skin	33 NX
Prostate	30 NX
Heart muscle	9 NX
Pancreas	7 NX

Spermatocytes	8 NX
Testis	8 NX

Spermatogonia	18 NX
Testis	18 NX

Suprabasal keratinocytes	15 NX
Skin	15 NX

Syncytiotrophoblasts	5 NX
Placenta	5 NX

T-cells	15 NX
Skin	22 NX
Lung	20 NX
Prostate	18 NX
Colon	14 NX
Liver	13 NX
Kidney	9 NX

Undifferentiated cells	16 NX
Rectum	21 NX
Colon	16 NX
Small intestine	15 NX

Urothelial cells	108 NX
Prostate	108 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.