Cell type atlas - PDE6D - The Human Protein Atlas

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PDE6D

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	PDE6D
Gene descriptionⁱ Full gene name according to HGNC.	Phosphodiesterase 6D
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Group enriched (Spermatocytes, Early spermatids, Late spermatids)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Group enriched (Spermatocytes, Early spermatids, Late spermatids)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	0 NX
Lung	0 NX

Alveolar cells type 2	8 NX
Lung	8 NX

B-cells	14 NX
Colon	18 NX
Kidney	13 NX
Liver	12 NX

Basal glandular cells	11 NX
Prostate	11 NX

Basal keratinocytes	12 NX
Skin	12 NX

Bipolar cells	14 NX
Eye	14 NX

Cardiomyocytes	11 NX
Heart muscle	11 NX

Cholangiocytes	13 NX
Liver	13 NX

Ciliated cells	11 NX
Lung	11 NX

Club cells	13 NX
Lung	13 NX

Collecting duct cells	12 NX
Kidney	12 NX

Cone photoreceptor cells	16 NX
Eye	16 NX

Cytotrophoblasts	14 NX
Placenta	14 NX

Distal tubular cells	22 NX
Kidney	22 NX

Ductal cells	20 NX
Pancreas	20 NX

Early spermatids	142 NX
Testis	142 NX

Endothelial cells	21 NX
Placenta	23 NX
Heart muscle	22 NX
Liver	22 NX
Pancreas	22 NX
Skin	19 NX
Testis	19 NX
Eye	18 NX
Prostate	17 NX
Lung	15 NX

Enterocytes	8 NX
Rectum	12 NX
Small intestine	10 NX
Colon	5 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	21 NX
Pancreas	21 NX

Extravillous trophoblasts	18 NX
Placenta	18 NX

Fibroblasts	15 NX
Heart muscle	27 NX
Placenta	15 NX
Skin	14 NX
Prostate	11 NX
Lung	4 NX

Glandular cells	10 NX
Prostate	10 NX

Granulocytes	14 NX
Lung	19 NX
Colon	9 NX

Hepatocytes	4 NX
Liver	4 NX

Hofbauer cells	17 NX
Placenta	17 NX

Horizontal cells	11 NX
Eye	11 NX

Intestinal endocrine cells	17 NX
Colon	17 NX
Rectum	16 NX

Ito cells	16 NX
Liver	16 NX

Kupffer cells	11 NX
Liver	11 NX

Late spermatids	104 NX
Testis	104 NX

Leydig cells	12 NX
Testis	12 NX

Macrophages	14 NX
Pancreas	28 NX
Lung	19 NX
Testis	17 NX
Prostate	14 NX
Skin	14 NX
Kidney	14 NX

Melanocytes	22 NX
Skin	22 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	31 NX
Pancreas	31 NX

Mucus-secreting cells	8 NX
Colon	9 NX
Small intestine	8 NX
Rectum	7 NX

Muller glia cells	16 NX
Eye	16 NX

Pancreatic endocrine cells	20 NX
Pancreas	20 NX

Paneth cells	14 NX
Rectum	15 NX
Colon	14 NX
Small intestine	11 NX

Peritubular cells	12 NX
Testis	12 NX

Proximal tubular cells	13 NX
Kidney	13 NX

Rod photoreceptor cells	24 NX
Eye	24 NX

Sertoli cells	19 NX
Testis	19 NX

Smooth muscle cells	20 NX
Heart muscle	48 NX
Skin	25 NX
Pancreas	17 NX
Prostate	13 NX

Spermatocytes	161 NX
Testis	161 NX

Spermatogonia	31 NX
Testis	31 NX

Suprabasal keratinocytes	12 NX
Skin	12 NX

Syncytiotrophoblasts	11 NX
Placenta	11 NX

T-cells	17 NX
Kidney	21 NX
Liver	19 NX
Skin	18 NX
Lung	17 NX
Colon	11 NX
Prostate	4 NX

Undifferentiated cells	10 NX
Small intestine	12 NX
Rectum	10 NX
Colon	6 NX

Urothelial cells	9 NX
Prostate	9 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.