Cell type atlas - SH3RF1 - The Human Protein Atlas

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SH3RF1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	SH3RF1
Gene descriptionⁱ Full gene name according to HGNC.	SH3 domain containing ring finger 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Group enriched (non-classical monocyte, intermediate monocyte, myeloid DC)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	60 NX
Lung	60 NX

Alveolar cells type 2	34 NX
Lung	34 NX

B-cells	6 NX
Liver	9 NX
Colon	7 NX
Kidney	0 NX

Basal glandular cells	32 NX
Prostate	32 NX

Basal keratinocytes	31 NX
Skin	31 NX

Bipolar cells	2 NX
Eye	2 NX

Cardiomyocytes	5 NX
Heart muscle	5 NX

Cholangiocytes	46 NX
Liver	46 NX

Ciliated cells	35 NX
Lung	35 NX

Club cells	46 NX
Lung	46 NX

Collecting duct cells	26 NX
Kidney	26 NX

Cone photoreceptor cells	0 NX
Eye	0 NX

Cytotrophoblasts	10 NX
Placenta	10 NX

Distal tubular cells	10 NX
Kidney	10 NX

Ductal cells	35 NX
Pancreas	35 NX

Early spermatids	4 NX
Testis	4 NX

Endothelial cells	11 NX
Eye	22 NX
Heart muscle	20 NX
Liver	14 NX
Prostate	11 NX
Testis	10 NX
Skin	7 NX
Placenta	6 NX
Pancreas	4 NX
Lung	3 NX

Enterocytes	53 NX
Colon	71 NX
Rectum	55 NX
Small intestine	26 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	55 NX
Pancreas	55 NX

Extravillous trophoblasts	19 NX
Placenta	19 NX

Fibroblasts	15 NX
Prostate	21 NX
Placenta	16 NX
Lung	15 NX
Skin	12 NX
Heart muscle	8 NX

Glandular cells	72 NX
Prostate	72 NX

Granulocytes	10 NX
Colon	18 NX
Lung	2 NX

Hepatocytes	8 NX
Liver	8 NX

Hofbauer cells	7 NX
Placenta	7 NX

Horizontal cells	0 NX
Eye	0 NX

Intestinal endocrine cells	30 NX
Rectum	40 NX
Colon	20 NX

Ito cells	9 NX
Liver	9 NX

Kupffer cells	7 NX
Liver	7 NX

Late spermatids	3 NX
Testis	3 NX

Leydig cells	11 NX
Testis	11 NX

Macrophages	8 NX
Pancreas	14 NX
Prostate	11 NX
Testis	8 NX
Kidney	8 NX
Lung	7 NX
Skin	3 NX

Melanocytes	3 NX
Skin	3 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	2 NX
Pancreas	2 NX

Mucus-secreting cells	27 NX
Rectum	30 NX
Small intestine	23 NX
Colon	18 NX

Muller glia cells	11 NX
Eye	11 NX

Pancreatic endocrine cells	55 NX
Pancreas	55 NX

Paneth cells	28 NX
Colon	58 NX
Rectum	28 NX
Small intestine	14 NX

Peritubular cells	11 NX
Testis	11 NX

Proximal tubular cells	13 NX
Kidney	13 NX

Rod photoreceptor cells	1 NX
Eye	1 NX

Sertoli cells	65 NX
Testis	65 NX

Smooth muscle cells	42 NX
Prostate	47 NX
Heart muscle	42 NX
Skin	42 NX
Pancreas	22 NX

Spermatocytes	2 NX
Testis	2 NX

Spermatogonia	8 NX
Testis	8 NX

Suprabasal keratinocytes	11 NX
Skin	11 NX

Syncytiotrophoblasts	11 NX
Placenta	11 NX

T-cells	0 NX
Prostate	4 NX
Lung	3 NX
Colon	2 NX
Skin	1 NX
Liver	0 NX
Kidney	0 NX

Undifferentiated cells	29 NX
Colon	30 NX
Rectum	29 NX
Small intestine	20 NX

Urothelial cells	56 NX
Prostate	56 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.