Cell type atlas - TERF1 - The Human Protein Atlas

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TERF1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TERF1
Gene descriptionⁱ Full gene name according to HGNC.	Telomeric repeat binding factor 1
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	27 NX
Lung	27 NX

Alveolar cells type 2	23 NX
Lung	23 NX

B-cells	39 NX
Kidney	62 NX
Colon	49 NX
Liver	14 NX

Basal glandular cells	34 NX
Prostate	34 NX

Basal keratinocytes	25 NX
Skin	25 NX

Bipolar cells	75 NX
Eye	75 NX

Cardiomyocytes	22 NX
Heart muscle	22 NX

Cholangiocytes	26 NX
Liver	26 NX

Ciliated cells	24 NX
Lung	24 NX

Club cells	15 NX
Lung	15 NX

Collecting duct cells	30 NX
Kidney	30 NX

Cone photoreceptor cells	81 NX
Eye	81 NX

Cytotrophoblasts	46 NX
Placenta	46 NX

Distal tubular cells	22 NX
Kidney	22 NX

Ductal cells	30 NX
Pancreas	30 NX

Early spermatids	9 NX
Testis	9 NX

Endothelial cells	35 NX
Testis	54 NX
Placenta	44 NX
Lung	41 NX
Skin	35 NX
Prostate	35 NX
Eye	35 NX
Liver	27 NX
Heart muscle	26 NX
Pancreas	18 NX

Enterocytes	14 NX
Rectum	31 NX
Small intestine	15 NX
Colon	10 NX

Erythroid cells	47 NX
Liver	47 NX

Exocrine glandular cells	33 NX
Pancreas	33 NX

Extravillous trophoblasts	52 NX
Placenta	52 NX

Fibroblasts	43 NX
Placenta	63 NX
Prostate	60 NX
Lung	43 NX
Skin	40 NX
Heart muscle	40 NX

Glandular cells	29 NX
Prostate	29 NX

Granulocytes	36 NX
Colon	37 NX
Lung	35 NX

Hepatocytes	27 NX
Liver	27 NX

Hofbauer cells	30 NX
Placenta	30 NX

Horizontal cells	67 NX
Eye	67 NX

Intestinal endocrine cells	88 NX
Colon	102 NX
Rectum	75 NX

Ito cells	44 NX
Liver	44 NX

Kupffer cells	25 NX
Liver	25 NX

Late spermatids	6 NX
Testis	6 NX

Leydig cells	69 NX
Testis	69 NX

Macrophages	30 NX
Testis	42 NX
Lung	40 NX
Prostate	31 NX
Skin	26 NX
Kidney	23 NX
Pancreas	9 NX

Melanocytes	29 NX
Skin	29 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	23 NX
Pancreas	23 NX

Mucus-secreting cells	24 NX
Colon	26 NX
Rectum	23 NX
Small intestine	20 NX

Muller glia cells	80 NX
Eye	80 NX

Pancreatic endocrine cells	24 NX
Pancreas	24 NX

Paneth cells	21 NX
Rectum	23 NX
Small intestine	21 NX
Colon	14 NX

Peritubular cells	80 NX
Testis	80 NX

Proximal tubular cells	45 NX
Kidney	45 NX

Rod photoreceptor cells	54 NX
Eye	54 NX

Sertoli cells	58 NX
Testis	58 NX

Smooth muscle cells	51 NX
Prostate	61 NX
Skin	58 NX
Pancreas	39 NX
Heart muscle	29 NX

Spermatocytes	82 NX
Testis	82 NX

Spermatogonia	125 NX
Testis	125 NX

Suprabasal keratinocytes	21 NX
Skin	21 NX

Syncytiotrophoblasts	27 NX
Placenta	27 NX

T-cells	47 NX
Kidney	60 NX
Colon	59 NX
Prostate	52 NX
Skin	47 NX
Lung	40 NX
Liver	40 NX

Undifferentiated cells	23 NX
Small intestine	32 NX
Rectum	22 NX
Colon	22 NX

Urothelial cells	23 NX
Prostate	23 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.