Cell type atlas - RPS27A - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

RPS27A

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	RPS27A
Gene descriptionⁱ Full gene name according to HGNC.	Ribosomal protein S27a
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	1182 NX
Lung	1182 NX

Alveolar cells type 2	2169 NX
Lung	2169 NX

B-cells	6366 NX
Kidney	8813 NX
Liver	6366 NX
Colon	1554 NX

Basal glandular cells	7791 NX
Prostate	7791 NX

Basal keratinocytes	7392 NX
Skin	7392 NX

Bipolar cells	428 NX
Eye	428 NX

Cardiomyocytes	362 NX
Heart muscle	362 NX

Cholangiocytes	2831 NX
Liver	2831 NX

Ciliated cells	1535 NX
Lung	1535 NX

Club cells	2714 NX
Lung	2714 NX

Collecting duct cells	1326 NX
Kidney	1326 NX

Cone photoreceptor cells	202 NX
Eye	202 NX

Cytotrophoblasts	4415 NX
Placenta	4415 NX

Distal tubular cells	3437 NX
Kidney	3437 NX

Ductal cells	2948 NX
Pancreas	2948 NX

Early spermatids	844 NX
Testis	844 NX

Endothelial cells	3491 NX
Prostate	6087 NX
Skin	5399 NX
Testis	4261 NX
Liver	4012 NX
Placenta	3491 NX
Pancreas	2550 NX
Lung	1931 NX
Eye	1364 NX
Heart muscle	323 NX

Enterocytes	1694 NX
Small intestine	3049 NX
Rectum	1424 NX
Colon	1367 NX

Erythroid cells	1752 NX
Liver	1752 NX

Exocrine glandular cells	6390 NX
Pancreas	6390 NX

Extravillous trophoblasts	5765 NX
Placenta	5765 NX

Fibroblasts	3525 NX
Lung	4517 NX
Prostate	3648 NX
Skin	3561 NX
Placenta	3234 NX
Heart muscle	369 NX

Glandular cells	5396 NX
Prostate	5396 NX

Granulocytes	2833 NX
Lung	4620 NX
Colon	1047 NX

Hepatocytes	2701 NX
Liver	2701 NX

Hofbauer cells	3058 NX
Placenta	3058 NX

Horizontal cells	207 NX
Eye	207 NX

Intestinal endocrine cells	1980 NX
Rectum	2872 NX
Colon	1087 NX

Ito cells	3107 NX
Liver	3107 NX

Kupffer cells	4339 NX
Liver	4339 NX

Late spermatids	1141 NX
Testis	1141 NX

Leydig cells	4705 NX
Testis	4705 NX

Macrophages	4813 NX
Prostate	5788 NX
Skin	5158 NX
Kidney	4851 NX
Testis	4822 NX
Lung	2697 NX
Pancreas	1338 NX

Melanocytes	3452 NX
Skin	3452 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	4888 NX
Pancreas	4888 NX

Mucus-secreting cells	3292 NX
Rectum	6125 NX
Small intestine	2989 NX
Colon	2097 NX

Muller glia cells	887 NX
Eye	887 NX

Pancreatic endocrine cells	4792 NX
Pancreas	4792 NX

Paneth cells	3027 NX
Rectum	4650 NX
Small intestine	3027 NX
Colon	1583 NX

Peritubular cells	2708 NX
Testis	2708 NX

Proximal tubular cells	4047 NX
Kidney	4047 NX

Rod photoreceptor cells	553 NX
Eye	553 NX

Sertoli cells	1617 NX
Testis	1617 NX

Smooth muscle cells	4202 NX
Skin	5082 NX
Prostate	4202 NX
Pancreas	2710 NX
Heart muscle	330 NX

Spermatocytes	923 NX
Testis	923 NX

Spermatogonia	805 NX
Testis	805 NX

Suprabasal keratinocytes	7807 NX
Skin	7807 NX

Syncytiotrophoblasts	4508 NX
Placenta	4508 NX

T-cells	4718 NX
Skin	8641 NX
Kidney	7716 NX
Prostate	6311 NX
Liver	4203 NX
Lung	4158 NX
Colon	1315 NX

Undifferentiated cells	5337 NX
Small intestine	5382 NX
Rectum	5339 NX
Colon	1496 NX

Urothelial cells	6553 NX
Prostate	6553 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.