Cell type atlas - MRPL9 - The Human Protein Atlas

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MRPL9

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	MRPL9
Gene descriptionⁱ Full gene name according to HGNC.	Mitochondrial ribosomal protein L9
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	27 NX
Lung	27 NX

Alveolar cells type 2	18 NX
Lung	18 NX

B-cells	43 NX
Colon	58 NX
Liver	47 NX
Kidney	27 NX

Basal glandular cells	42 NX
Prostate	42 NX

Basal keratinocytes	28 NX
Skin	28 NX

Bipolar cells	17 NX
Eye	17 NX

Cardiomyocytes	4 NX
Heart muscle	4 NX

Cholangiocytes	28 NX
Liver	28 NX

Ciliated cells	39 NX
Lung	39 NX

Club cells	33 NX
Lung	33 NX

Collecting duct cells	31 NX
Kidney	31 NX

Cone photoreceptor cells	6 NX
Eye	6 NX

Cytotrophoblasts	86 NX
Placenta	85 NX

Distal tubular cells	55 NX
Kidney	55 NX

Ductal cells	61 NX
Pancreas	61 NX

Early spermatids	60 NX
Testis	60 NX

Endothelial cells	39 NX
Pancreas	90 NX
Placenta	72 NX
Testis	56 NX
Liver	45 NX
Skin	41 NX
Lung	32 NX
Prostate	30 NX
Eye	22 NX
Heart muscle	7 NX

Enterocytes	18 NX
Small intestine	26 NX
Rectum	19 NX
Colon	13 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	56 NX
Pancreas	56 NX

Extravillous trophoblasts	100 NX
Placenta	100 NX

Fibroblasts	33 NX
Placenta	50 NX
Skin	32 NX
Lung	27 NX
Prostate	23 NX
Heart muscle	3 NX

Glandular cells	38 NX
Prostate	38 NX

Granulocytes	39 NX
Lung	51 NX
Colon	28 NX

Hepatocytes	26 NX
Liver	26 NX

Hofbauer cells	57 NX
Placenta	57 NX

Horizontal cells	18 NX
Eye	18 NX

Intestinal endocrine cells	28 NX
Colon	34 NX
Rectum	21 NX

Ito cells	40 NX
Liver	40 NX

Kupffer cells	21 NX
Liver	21 NX

Late spermatids	21 NX
Testis	21 NX

Leydig cells	36 NX
Testis	36 NX

Macrophages	30 NX
Skin	47 NX
Kidney	42 NX
Testis	34 NX
Prostate	30 NX
Lung	21 NX
Pancreas	16 NX

Melanocytes	34 NX
Skin	34 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	79 NX
Pancreas	79 NX

Mucus-secreting cells	27 NX
Rectum	38 NX
Small intestine	25 NX
Colon	23 NX

Muller glia cells	31 NX
Eye	31 NX

Pancreatic endocrine cells	60 NX
Pancreas	60 NX

Paneth cells	25 NX
Rectum	34 NX
Small intestine	25 NX
Colon	9 NX

Peritubular cells	44 NX
Testis	44 NX

Proximal tubular cells	67 NX
Kidney	67 NX

Rod photoreceptor cells	17 NX
Eye	17 NX

Sertoli cells	71 NX
Testis	71 NX

Smooth muscle cells	34 NX
Pancreas	77 NX
Prostate	35 NX
Skin	34 NX
Heart muscle	9 NX

Spermatocytes	37 NX
Testis	37 NX

Spermatogonia	32 NX
Testis	32 NX

Suprabasal keratinocytes	28 NX
Skin	28 NX

Syncytiotrophoblasts	62 NX
Placenta	62 NX

T-cells	45 NX
Kidney	61 NX
Skin	50 NX
Prostate	48 NX
Colon	47 NX
Liver	36 NX
Lung	32 NX

Undifferentiated cells	46 NX
Small intestine	54 NX
Rectum	46 NX
Colon	35 NX

Urothelial cells	35 NX
Prostate	35 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.