Cell type atlas - SORD - The Human Protein Atlas

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SORD

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	SORD
Gene descriptionⁱ Full gene name according to HGNC.	Sorbitol dehydrogenase
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Hepatocytes, Proximal tubular cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enriched (eosinophil)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Hepatocytes, Proximal tubular cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	0 NX
Lung	0 NX

Alveolar cells type 2	2 NX
Lung	2 NX

B-cells	17 NX
Kidney	27 NX
Liver	12 NX
Colon	11 NX

Basal glandular cells	21 NX
Prostate	21 NX

Basal keratinocytes	7 NX
Skin	7 NX

Bipolar cells	10 NX
Eye	9 NX

Cardiomyocytes	3 NX
Heart muscle	3 NX

Cholangiocytes	38 NX
Liver	38 NX

Ciliated cells	28 NX
Lung	28 NX

Club cells	28 NX
Lung	28 NX

Collecting duct cells	31 NX
Kidney	31 NX

Cone photoreceptor cells	0 NX
Eye	0 NX

Cytotrophoblasts	1 NX
Placenta	1 NX

Distal tubular cells	25 NX
Kidney	25 NX

Ductal cells	53 NX
Pancreas	53 NX

Early spermatids	26 NX
Testis	26 NX

Endothelial cells	4 NX
Liver	22 NX
Prostate	9 NX
Pancreas	7 NX
Testis	4 NX
Eye	4 NX
Lung	3 NX
Skin	3 NX
Heart muscle	2 NX
Placenta	2 NX

Enterocytes	9 NX
Colon	12 NX
Small intestine	9 NX
Rectum	8 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	118 NX
Pancreas	118 NX

Extravillous trophoblasts	4 NX
Placenta	4 NX

Fibroblasts	6 NX
Prostate	8 NX
Skin	6 NX
Placenta	6 NX
Lung	3 NX
Heart muscle	2 NX

Glandular cells	134 NX
Prostate	134 NX

Granulocytes	8 NX
Lung	16 NX
Colon	0 NX

Hepatocytes	655 NX
Liver	655 NX

Hofbauer cells	14 NX
Placenta	14 NX

Horizontal cells	3 NX
Eye	3 NX

Intestinal endocrine cells	81 NX
Colon	102 NX
Rectum	61 NX

Ito cells	21 NX
Liver	21 NX

Kupffer cells	21 NX
Liver	21 NX

Late spermatids	17 NX
Testis	17 NX

Leydig cells	3 NX
Testis	3 NX

Macrophages	8 NX
Kidney	29 NX
Pancreas	14 NX
Prostate	13 NX
Lung	7 NX
Skin	7 NX
Testis	6 NX

Melanocytes	15 NX
Skin	15 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	8 NX
Pancreas	8 NX

Mucus-secreting cells	29 NX
Rectum	33 NX
Small intestine	27 NX
Colon	26 NX

Muller glia cells	7 NX
Eye	7 NX

Pancreatic endocrine cells	91 NX
Pancreas	91 NX

Paneth cells	13 NX
Colon	35 NX
Rectum	13 NX
Small intestine	0 NX

Peritubular cells	6 NX
Testis	6 NX

Proximal tubular cells	227 NX
Kidney	227 NX

Rod photoreceptor cells	4 NX
Eye	4 NX

Sertoli cells	0 NX
Testis	0 NX

Smooth muscle cells	9 NX
Prostate	12 NX
Pancreas	12 NX
Skin	7 NX
Heart muscle	2 NX

Spermatocytes	7 NX
Testis	7 NX

Spermatogonia	3 NX
Testis	3 NX

Suprabasal keratinocytes	18 NX
Skin	18 NX

Syncytiotrophoblasts	1 NX
Placenta	1 NX

T-cells	6 NX
Prostate	13 NX
Kidney	10 NX
Liver	7 NX
Lung	6 NX
Colon	5 NX
Skin	5 NX

Undifferentiated cells	33 NX
Small intestine	42 NX
Rectum	30 NX
Colon	23 NX

Urothelial cells	88 NX
Prostate	88 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.