Cell type atlas - WARS - The Human Protein Atlas

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WARS

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	WARS
Gene descriptionⁱ Full gene name according to HGNC.	Tryptophanyl-tRNA synthetase
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Enzymes Plasma proteins Potential drug targets
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	32

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Early spermatids)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (non-classical monocyte, intermediate monocyte)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (HHSteC, SK-MEL-30)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Early spermatids)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	24 NX
Lung	24 NX

Alveolar cells type 2	40 NX
Lung	40 NX

B-cells	42 NX
Colon	55 NX
Liver	53 NX
Kidney	22 NX

Basal glandular cells	7 NX
Prostate	7 NX

Basal keratinocytes	13 NX
Skin	13 NX

Bipolar cells	9 NX
Eye	9 NX

Cardiomyocytes	12 NX
Heart muscle	12 NX

Cholangiocytes	8 NX
Liver	8 NX

Ciliated cells	31 NX
Lung	31 NX

Club cells	30 NX
Lung	30 NX

Collecting duct cells	21 NX
Kidney	21 NX

Cone photoreceptor cells	20 NX
Eye	20 NX

Cytotrophoblasts	15 NX
Placenta	15 NX

Distal tubular cells	13 NX
Kidney	13 NX

Ductal cells	29 NX
Pancreas	29 NX

Early spermatids	113 NX
Testis	113 NX

Endothelial cells	76 NX
Placenta	263 NX
Heart muscle	241 NX
Lung	140 NX
Prostate	92 NX
Liver	76 NX
Pancreas	68 NX
Skin	55 NX
Eye	46 NX
Testis	40 NX

Enterocytes	9 NX
Colon	11 NX
Rectum	8 NX
Small intestine	7 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	56 NX
Pancreas	56 NX

Extravillous trophoblasts	10 NX
Placenta	10 NX

Fibroblasts	21 NX
Lung	40 NX
Prostate	27 NX
Placenta	23 NX
Heart muscle	21 NX
Skin	16 NX

Glandular cells	12 NX
Prostate	12 NX

Granulocytes	29 NX
Lung	40 NX
Colon	18 NX

Hepatocytes	15 NX
Liver	15 NX

Hofbauer cells	41 NX
Placenta	41 NX

Horizontal cells	8 NX
Eye	8 NX

Intestinal endocrine cells	14 NX
Colon	17 NX
Rectum	12 NX

Ito cells	88 NX
Liver	88 NX

Kupffer cells	44 NX
Liver	44 NX

Late spermatids	83 NX
Testis	83 NX

Leydig cells	11 NX
Testis	11 NX

Macrophages	73 NX
Kidney	191 NX
Lung	159 NX
Pancreas	94 NX
Skin	38 NX
Prostate	31 NX
Testis	17 NX

Melanocytes	9 NX
Skin	9 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	71 NX
Pancreas	71 NX

Mucus-secreting cells	14 NX
Colon	49 NX
Small intestine	14 NX
Rectum	10 NX

Muller glia cells	9 NX
Eye	9 NX

Pancreatic endocrine cells	34 NX
Pancreas	34 NX

Paneth cells	7 NX
Colon	9 NX
Rectum	7 NX
Small intestine	4 NX

Peritubular cells	13 NX
Testis	13 NX

Proximal tubular cells	15 NX
Kidney	15 NX

Rod photoreceptor cells	16 NX
Eye	16 NX

Sertoli cells	19 NX
Testis	19 NX

Smooth muscle cells	22 NX
Pancreas	136 NX
Heart muscle	33 NX
Prostate	21 NX
Skin	17 NX

Spermatocytes	69 NX
Testis	69 NX

Spermatogonia	21 NX
Testis	21 NX

Suprabasal keratinocytes	11 NX
Skin	11 NX

Syncytiotrophoblasts	14 NX
Placenta	14 NX

T-cells	10 NX
Lung	26 NX
Prostate	26 NX
Liver	13 NX
Colon	10 NX
Kidney	9 NX
Skin	9 NX

Undifferentiated cells	10 NX
Colon	17 NX
Rectum	11 NX
Small intestine	10 NX

Urothelial cells	11 NX
Prostate	11 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.