Cell type atlas - CSAD - The Human Protein Atlas

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CSAD

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CSAD
Gene descriptionⁱ Full gene name according to HGNC.	Cysteine sulfinic acid decarboxylase
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	10

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enriched (neutrophil)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (ASC diff, T-47d)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	3 NX
Lung	3 NX

Alveolar cells type 2	16 NX
Lung	16 NX

B-cells	22 NX
Kidney	27 NX
Liver	19 NX
Colon	18 NX

Basal glandular cells	24 NX
Prostate	24 NX

Basal keratinocytes	15 NX
Skin	15 NX

Bipolar cells	28 NX
Eye	28 NX

Cardiomyocytes	8 NX
Heart muscle	8 NX

Cholangiocytes	13 NX
Liver	13 NX

Ciliated cells	15 NX
Lung	15 NX

Club cells	11 NX
Lung	11 NX

Collecting duct cells	23 NX
Kidney	23 NX

Cone photoreceptor cells	16 NX
Eye	16 NX

Cytotrophoblasts	10 NX
Placenta	10 NX

Distal tubular cells	3 NX
Kidney	3 NX

Ductal cells	10 NX
Pancreas	10 NX

Early spermatids	0 NX
Testis	0 NX

Endothelial cells	19 NX
Heart muscle	45 NX
Eye	41 NX
Placenta	24 NX
Testis	22 NX
Prostate	18 NX
Skin	18 NX
Liver	16 NX
Lung	15 NX
Pancreas	14 NX

Enterocytes	20 NX
Colon	24 NX
Small intestine	19 NX
Rectum	12 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	8 NX
Pancreas	8 NX

Extravillous trophoblasts	6 NX
Placenta	6 NX

Fibroblasts	18 NX
Heart muscle	31 NX
Skin	19 NX
Prostate	18 NX
Lung	18 NX
Placenta	15 NX

Glandular cells	30 NX
Prostate	30 NX

Granulocytes	9 NX
Colon	9 NX
Lung	9 NX

Hepatocytes	35 NX
Liver	35 NX

Hofbauer cells	7 NX
Placenta	7 NX

Horizontal cells	25 NX
Eye	25 NX

Intestinal endocrine cells	14 NX
Colon	14 NX
Rectum	14 NX

Ito cells	12 NX
Liver	12 NX

Kupffer cells	11 NX
Liver	11 NX

Late spermatids	1 NX
Testis	1 NX

Leydig cells	25 NX
Testis	25 NX

Macrophages	12 NX
Prostate	18 NX
Testis	15 NX
Skin	14 NX
Lung	11 NX
Kidney	8 NX
Pancreas	7 NX

Melanocytes	14 NX
Skin	14 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	12 NX
Pancreas	12 NX

Mucus-secreting cells	13 NX
Small intestine	36 NX
Colon	17 NX
Rectum	10 NX

Muller glia cells	30 NX
Eye	30 NX

Pancreatic endocrine cells	8 NX
Pancreas	8 NX

Paneth cells	28 NX
Colon	29 NX
Small intestine	28 NX
Rectum	12 NX

Peritubular cells	29 NX
Testis	29 NX

Proximal tubular cells	2 NX
Kidney	2 NX

Rod photoreceptor cells	28 NX
Eye	28 NX

Sertoli cells	39 NX
Testis	39 NX

Smooth muscle cells	22 NX
Heart muscle	51 NX
Prostate	38 NX
Skin	17 NX
Pancreas	9 NX

Spermatocytes	51 NX
Testis	51 NX

Spermatogonia	59 NX
Testis	59 NX

Suprabasal keratinocytes	16 NX
Skin	16 NX

Syncytiotrophoblasts	7 NX
Placenta	7 NX

T-cells	13 NX
Kidney	19 NX
Colon	14 NX
Prostate	13 NX
Liver	11 NX
Skin	10 NX
Lung	9 NX

Undifferentiated cells	12 NX
Small intestine	12 NX
Colon	12 NX
Rectum	11 NX

Urothelial cells	20 NX
Prostate	20 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.