Cell type atlas - NIPSNAP3A - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

NIPSNAP3A

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	NIPSNAP3A
Gene descriptionⁱ Full gene name according to HGNC.	Nipsnap homolog 3A
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	21 NX
Lung	21 NX

Alveolar cells type 2	13 NX
Lung	13 NX

B-cells	19 NX
Kidney	40 NX
Colon	22 NX
Liver	8 NX

Basal glandular cells	17 NX
Prostate	17 NX

Basal keratinocytes	25 NX
Skin	25 NX

Bipolar cells	8 NX
Eye	8 NX

Cardiomyocytes	12 NX
Heart muscle	12 NX

Cholangiocytes	18 NX
Liver	18 NX

Ciliated cells	15 NX
Lung	15 NX

Club cells	16 NX
Lung	16 NX

Collecting duct cells	28 NX
Kidney	28 NX

Cone photoreceptor cells	2 NX
Eye	2 NX

Cytotrophoblasts	33 NX
Placenta	33 NX

Distal tubular cells	88 NX
Kidney	88 NX

Ductal cells	24 NX
Pancreas	24 NX

Early spermatids	3 NX
Testis	3 NX

Endothelial cells	16 NX
Placenta	44 NX
Testis	29 NX
Skin	24 NX
Liver	18 NX
Eye	16 NX
Lung	15 NX
Prostate	13 NX
Heart muscle	9 NX
Pancreas	7 NX

Enterocytes	19 NX
Rectum	31 NX
Colon	19 NX
Small intestine	17 NX

Erythroid cells	23 NX
Liver	23 NX

Exocrine glandular cells	24 NX
Pancreas	24 NX

Extravillous trophoblasts	27 NX
Placenta	27 NX

Fibroblasts	25 NX
Placenta	47 NX
Skin	23 NX
Heart muscle	21 NX
Prostate	9 NX
Lung	4 NX

Glandular cells	11 NX
Prostate	11 NX

Granulocytes	52 NX
Colon	74 NX
Lung	30 NX

Hepatocytes	35 NX
Liver	35 NX

Hofbauer cells	71 NX
Placenta	71 NX

Horizontal cells	3 NX
Eye	3 NX

Intestinal endocrine cells	24 NX
Rectum	28 NX
Colon	20 NX

Ito cells	25 NX
Liver	25 NX

Kupffer cells	46 NX
Liver	46 NX

Late spermatids	3 NX
Testis	3 NX

Leydig cells	18 NX
Testis	18 NX

Macrophages	35 NX
Skin	56 NX
Testis	54 NX
Kidney	38 NX
Prostate	33 NX
Pancreas	28 NX
Lung	22 NX

Melanocytes	35 NX
Skin	35 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	79 NX
Pancreas	79 NX

Mucus-secreting cells	32 NX
Rectum	38 NX
Small intestine	31 NX
Colon	29 NX

Muller glia cells	7 NX
Eye	7 NX

Pancreatic endocrine cells	23 NX
Pancreas	23 NX

Paneth cells	11 NX
Rectum	37 NX
Small intestine	11 NX
Colon	0 NX

Peritubular cells	21 NX
Testis	21 NX

Proximal tubular cells	32 NX
Kidney	32 NX

Rod photoreceptor cells	5 NX
Eye	5 NX

Sertoli cells	26 NX
Testis	26 NX

Smooth muscle cells	19 NX
Pancreas	40 NX
Skin	24 NX
Heart muscle	18 NX
Prostate	11 NX

Spermatocytes	14 NX
Testis	14 NX

Spermatogonia	18 NX
Testis	18 NX

Suprabasal keratinocytes	34 NX
Skin	34 NX

Syncytiotrophoblasts	26 NX
Placenta	26 NX

T-cells	14 NX
Lung	22 NX
Liver	16 NX
Kidney	16 NX
Colon	13 NX
Skin	12 NX
Prostate	4 NX

Undifferentiated cells	34 NX
Small intestine	36 NX
Rectum	34 NX
Colon	29 NX

Urothelial cells	22 NX
Prostate	22 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.