Cell type atlas - ZDHHC4 - The Human Protein Atlas

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ZDHHC4

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ZDHHC4
Gene descriptionⁱ Full gene name according to HGNC.	Zinc finger DHHC-type containing 4
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	7

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	36 NX
Lung	36 NX

Alveolar cells type 2	15 NX
Lung	15 NX

B-cells	25 NX
Liver	40 NX
Kidney	22 NX
Colon	15 NX

Basal glandular cells	40 NX
Prostate	40 NX

Basal keratinocytes	10 NX
Skin	10 NX

Bipolar cells	30 NX
Eye	30 NX

Cardiomyocytes	4 NX
Heart muscle	4 NX

Cholangiocytes	56 NX
Liver	56 NX

Ciliated cells	27 NX
Lung	27 NX

Club cells	32 NX
Lung	32 NX

Collecting duct cells	33 NX
Kidney	33 NX

Cone photoreceptor cells	10 NX
Eye	10 NX

Cytotrophoblasts	58 NX
Placenta	58 NX

Distal tubular cells	73 NX
Kidney	73 NX

Ductal cells	54 NX
Pancreas	54 NX

Early spermatids	2 NX
Testis	2 NX

Endothelial cells	11 NX
Eye	26 NX
Placenta	22 NX
Liver	22 NX
Testis	13 NX
Lung	12 NX
Prostate	11 NX
Pancreas	11 NX
Skin	9 NX
Heart muscle	1 NX

Enterocytes	10 NX
Small intestine	22 NX
Rectum	14 NX
Colon	9 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	58 NX
Pancreas	58 NX

Extravillous trophoblasts	56 NX
Placenta	56 NX

Fibroblasts	27 NX
Placenta	46 NX
Lung	27 NX
Skin	23 NX
Prostate	21 NX
Heart muscle	6 NX

Glandular cells	33 NX
Prostate	33 NX

Granulocytes	10 NX
Colon	18 NX
Lung	2 NX

Hepatocytes	38 NX
Liver	38 NX

Hofbauer cells	48 NX
Placenta	48 NX

Horizontal cells	21 NX
Eye	21 NX

Intestinal endocrine cells	31 NX
Rectum	35 NX
Colon	27 NX

Ito cells	21 NX
Liver	21 NX

Kupffer cells	26 NX
Liver	26 NX

Late spermatids	2 NX
Testis	2 NX

Leydig cells	17 NX
Testis	17 NX

Macrophages	18 NX
Pancreas	54 NX
Testis	34 NX
Prostate	27 NX
Kidney	18 NX
Skin	17 NX
Lung	16 NX

Melanocytes	20 NX
Skin	20 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	39 NX
Pancreas	39 NX

Mucus-secreting cells	19 NX
Rectum	25 NX
Small intestine	17 NX
Colon	13 NX

Muller glia cells	46 NX
Eye	46 NX

Pancreatic endocrine cells	49 NX
Pancreas	49 NX

Paneth cells	18 NX
Rectum	29 NX
Small intestine	18 NX
Colon	12 NX

Peritubular cells	31 NX
Testis	31 NX

Proximal tubular cells	59 NX
Kidney	59 NX

Rod photoreceptor cells	20 NX
Eye	20 NX

Sertoli cells	13 NX
Testis	13 NX

Smooth muscle cells	31 NX
Pancreas	33 NX
Skin	31 NX
Prostate	28 NX
Heart muscle	7 NX

Spermatocytes	76 NX
Testis	76 NX

Spermatogonia	50 NX
Testis	50 NX

Suprabasal keratinocytes	8 NX
Skin	8 NX

Syncytiotrophoblasts	41 NX
Placenta	41 NX

T-cells	22 NX
Kidney	26 NX
Liver	24 NX
Colon	19 NX
Prostate	18 NX
Skin	14 NX
Lung	9 NX

Undifferentiated cells	29 NX
Small intestine	35 NX
Rectum	25 NX
Colon	10 NX

Urothelial cells	27 NX
Prostate	27 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.