Cell type atlas - PTPRE - The Human Protein Atlas

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PTPRE

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	PTPRE
Gene descriptionⁱ Full gene name according to HGNC.	Protein tyrosine phosphatase, receptor type E
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	6

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Macrophages, Kupffer cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (neutrophil, plasmacytoid DC)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (hTERT-RPE1, HUVEC TERT2, NB-4, TIME)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Macrophages, Kupffer cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	77 NX
Lung	77 NX

Alveolar cells type 2	68 NX
Lung	68 NX

B-cells	25 NX
Kidney	40 NX
Colon	39 NX
Liver	5 NX

Basal glandular cells	47 NX
Prostate	47 NX

Basal keratinocytes	53 NX
Skin	53 NX

Bipolar cells	3 NX
Eye	3 NX

Cardiomyocytes	15 NX
Heart muscle	15 NX

Cholangiocytes	5 NX
Liver	5 NX

Ciliated cells	9 NX
Lung	9 NX

Club cells	33 NX
Lung	33 NX

Collecting duct cells	4 NX
Kidney	4 NX

Cone photoreceptor cells	0 NX
Eye	0 NX

Cytotrophoblasts	34 NX
Placenta	34 NX

Distal tubular cells	0 NX
Kidney	0 NX

Ductal cells	4 NX
Pancreas	4 NX

Early spermatids	2 NX
Testis	2 NX

Endothelial cells	49 NX
Lung	198 NX
Pancreas	161 NX
Skin	148 NX
Prostate	98 NX
Eye	89 NX
Liver	41 NX
Heart muscle	23 NX
Testis	23 NX
Placenta	22 NX

Enterocytes	12 NX
Rectum	18 NX
Small intestine	13 NX
Colon	8 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	4 NX
Pancreas	4 NX

Extravillous trophoblasts	41 NX
Placenta	41 NX

Fibroblasts	10 NX
Lung	44 NX
Prostate	17 NX
Skin	13 NX
Heart muscle	8 NX
Placenta	5 NX

Glandular cells	8 NX
Prostate	8 NX

Granulocytes	30 NX
Lung	42 NX
Colon	18 NX

Hepatocytes	1 NX
Liver	1 NX

Hofbauer cells	54 NX
Placenta	54 NX

Horizontal cells	0 NX
Eye	0 NX

Intestinal endocrine cells	6 NX
Rectum	9 NX
Colon	3 NX

Ito cells	46 NX
Liver	46 NX

Kupffer cells	141 NX
Liver	141 NX

Late spermatids	2 NX
Testis	2 NX

Leydig cells	1 NX
Testis	1 NX

Macrophages	249 NX
Lung	290 NX
Skin	280 NX
Testis	253 NX
Pancreas	246 NX
Kidney	216 NX
Prostate	203 NX

Melanocytes	24 NX
Skin	24 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	5 NX
Pancreas	5 NX

Mucus-secreting cells	14 NX
Rectum	17 NX
Small intestine	16 NX
Colon	12 NX

Muller glia cells	0 NX
Eye	0 NX

Pancreatic endocrine cells	29 NX
Pancreas	29 NX

Paneth cells	12 NX
Rectum	14 NX
Colon	12 NX
Small intestine	11 NX

Peritubular cells	0 NX
Testis	0 NX

Proximal tubular cells	2 NX
Kidney	2 NX

Rod photoreceptor cells	1 NX
Eye	1 NX

Sertoli cells	0 NX
Testis	0 NX

Smooth muscle cells	8 NX
Pancreas	29 NX
Skin	11 NX
Prostate	8 NX
Heart muscle	4 NX

Spermatocytes	1 NX
Testis	1 NX

Spermatogonia	1 NX
Testis	1 NX

Suprabasal keratinocytes	57 NX
Skin	57 NX

Syncytiotrophoblasts	14 NX
Placenta	14 NX

T-cells	52 NX
Lung	137 NX
Kidney	56 NX
Liver	54 NX
Prostate	35 NX
Colon	31 NX
Skin	30 NX

Undifferentiated cells	10 NX
Small intestine	14 NX
Rectum	10 NX
Colon	2 NX

Urothelial cells	34 NX
Prostate	34 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.