Cell type atlas - NSUN5 - The Human Protein Atlas

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NSUN5

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	NSUN5
Gene descriptionⁱ Full gene name according to HGNC.	NOP2/Sun RNA methyltransferase family member 5
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	6 NX
Lung	6 NX

Alveolar cells type 2	6 NX
Lung	6 NX

B-cells	52 NX
Kidney	94 NX
Liver	52 NX
Colon	16 NX

Basal glandular cells	17 NX
Prostate	17 NX

Basal keratinocytes	15 NX
Skin	15 NX

Bipolar cells	25 NX
Eye	25 NX

Cardiomyocytes	17 NX
Heart muscle	17 NX

Cholangiocytes	26 NX
Liver	26 NX

Ciliated cells	11 NX
Lung	11 NX

Club cells	13 NX
Lung	13 NX

Collecting duct cells	35 NX
Kidney	35 NX

Cone photoreceptor cells	12 NX
Eye	12 NX

Cytotrophoblasts	33 NX
Placenta	33 NX

Distal tubular cells	32 NX
Kidney	32 NX

Ductal cells	36 NX
Pancreas	36 NX

Early spermatids	13 NX
Testis	13 NX

Endothelial cells	7 NX
Heart muscle	20 NX
Eye	12 NX
Placenta	11 NX
Skin	8 NX
Pancreas	7 NX
Testis	7 NX
Lung	6 NX
Prostate	4 NX
Liver	0 NX

Enterocytes	19 NX
Small intestine	23 NX
Colon	16 NX
Rectum	14 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	29 NX
Pancreas	29 NX

Extravillous trophoblasts	38 NX
Placenta	38 NX

Fibroblasts	17 NX
Placenta	22 NX
Heart muscle	16 NX
Skin	16 NX
Lung	14 NX
Prostate	10 NX

Glandular cells	13 NX
Prostate	13 NX

Granulocytes	27 NX
Colon	37 NX
Lung	16 NX

Hepatocytes	20 NX
Liver	20 NX

Hofbauer cells	31 NX
Placenta	31 NX

Horizontal cells	30 NX
Eye	30 NX

Intestinal endocrine cells	4 NX
Rectum	7 NX
Colon	0 NX

Ito cells	7 NX
Liver	7 NX

Kupffer cells	17 NX
Liver	17 NX

Late spermatids	16 NX
Testis	16 NX

Leydig cells	27 NX
Testis	27 NX

Macrophages	19 NX
Testis	38 NX
Pancreas	30 NX
Prostate	24 NX
Kidney	21 NX
Skin	13 NX
Lung	12 NX

Melanocytes	20 NX
Skin	20 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	47 NX
Pancreas	47 NX

Mucus-secreting cells	16 NX
Small intestine	17 NX
Colon	16 NX
Rectum	14 NX

Muller glia cells	14 NX
Eye	14 NX

Pancreatic endocrine cells	24 NX
Pancreas	24 NX

Paneth cells	18 NX
Small intestine	21 NX
Rectum	18 NX
Colon	17 NX

Peritubular cells	19 NX
Testis	19 NX

Proximal tubular cells	20 NX
Kidney	20 NX

Rod photoreceptor cells	21 NX
Eye	21 NX

Sertoli cells	7 NX
Testis	7 NX

Smooth muscle cells	14 NX
Pancreas	27 NX
Heart muscle	26 NX
Skin	11 NX
Prostate	10 NX

Spermatocytes	61 NX
Testis	61 NX

Spermatogonia	59 NX
Testis	59 NX

Suprabasal keratinocytes	19 NX
Skin	19 NX

Syncytiotrophoblasts	18 NX
Placenta	18 NX

T-cells	25 NX
Kidney	42 NX
Liver	36 NX
Skin	20 NX
Colon	19 NX
Prostate	18 NX
Lung	13 NX

Undifferentiated cells	20 NX
Small intestine	21 NX
Rectum	20 NX
Colon	18 NX

Urothelial cells	16 NX
Prostate	16 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.