Cell type atlas - AGO3 - The Human Protein Atlas

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AGO3

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	AGO3
Gene descriptionⁱ Full gene name according to HGNC.	Argonaute 3, RISC catalytic component
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	80 NX
Lung	80 NX

Alveolar cells type 2	43 NX
Lung	43 NX

B-cells	19 NX
Kidney	36 NX
Colon	24 NX
Liver	13 NX

Basal glandular cells	31 NX
Prostate	31 NX

Basal keratinocytes	35 NX
Skin	35 NX

Bipolar cells	68 NX
Eye	68 NX

Cardiomyocytes	17 NX
Heart muscle	17 NX

Cholangiocytes	8 NX
Liver	8 NX

Ciliated cells	12 NX
Lung	12 NX

Club cells	26 NX
Lung	26 NX

Collecting duct cells	24 NX
Kidney	24 NX

Cone photoreceptor cells	106 NX
Eye	106 NX

Cytotrophoblasts	9 NX
Placenta	9 NX

Distal tubular cells	0 NX
Kidney	0 NX

Ductal cells	13 NX
Pancreas	13 NX

Early spermatids	43 NX
Testis	43 NX

Endothelial cells	30 NX
Prostate	52 NX
Liver	43 NX
Skin	36 NX
Lung	35 NX
Heart muscle	30 NX
Testis	25 NX
Eye	23 NX
Placenta	15 NX
Pancreas	14 NX

Enterocytes	13 NX
Small intestine	13 NX
Rectum	13 NX
Colon	8 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	11 NX
Pancreas	11 NX

Extravillous trophoblasts	11 NX
Placenta	11 NX

Fibroblasts	30 NX
Prostate	76 NX
Heart muscle	43 NX
Skin	40 NX
Lung	29 NX
Placenta	23 NX

Glandular cells	31 NX
Prostate	31 NX

Granulocytes	56 NX
Colon	92 NX
Lung	21 NX

Hepatocytes	20 NX
Liver	20 NX

Hofbauer cells	14 NX
Placenta	14 NX

Horizontal cells	40 NX
Eye	40 NX

Intestinal endocrine cells	45 NX
Colon	48 NX
Rectum	42 NX

Ito cells	31 NX
Liver	31 NX

Kupffer cells	28 NX
Liver	28 NX

Late spermatids	54 NX
Testis	54 NX

Leydig cells	35 NX
Testis	35 NX

Macrophages	35 NX
Lung	47 NX
Skin	40 NX
Prostate	31 NX
Testis	21 NX
Kidney	18 NX
Pancreas	16 NX

Melanocytes	22 NX
Skin	22 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	14 NX
Pancreas	14 NX

Mucus-secreting cells	14 NX
Rectum	15 NX
Small intestine	15 NX
Colon	13 NX

Muller glia cells	46 NX
Eye	46 NX

Pancreatic endocrine cells	14 NX
Pancreas	14 NX

Paneth cells	7 NX
Rectum	15 NX
Small intestine	7 NX
Colon	3 NX

Peritubular cells	39 NX
Testis	39 NX

Proximal tubular cells	7 NX
Kidney	7 NX

Rod photoreceptor cells	82 NX
Eye	82 NX

Sertoli cells	19 NX
Testis	19 NX

Smooth muscle cells	33 NX
Prostate	36 NX
Skin	33 NX
Heart muscle	21 NX
Pancreas	10 NX

Spermatocytes	33 NX
Testis	33 NX

Spermatogonia	20 NX
Testis	20 NX

Suprabasal keratinocytes	29 NX
Skin	29 NX

Syncytiotrophoblasts	11 NX
Placenta	11 NX

T-cells	28 NX
Colon	42 NX
Prostate	35 NX
Liver	30 NX
Skin	27 NX
Lung	27 NX
Kidney	25 NX

Undifferentiated cells	16 NX
Rectum	17 NX
Colon	16 NX
Small intestine	14 NX

Urothelial cells	25 NX
Prostate	25 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.