Cell type atlas - MRPS7 - The Human Protein Atlas

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MRPS7

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	MRPS7
Gene descriptionⁱ Full gene name according to HGNC.	Mitochondrial ribosomal protein S7
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Late spermatids)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Late spermatids)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	48 NX
Lung	48 NX

Alveolar cells type 2	42 NX
Lung	42 NX

B-cells	81 NX
Kidney	94 NX
Liver	80 NX
Colon	69 NX

Basal glandular cells	60 NX
Prostate	60 NX

Basal keratinocytes	35 NX
Skin	35 NX

Bipolar cells	66 NX
Eye	66 NX

Cardiomyocytes	63 NX
Heart muscle	63 NX

Cholangiocytes	61 NX
Liver	61 NX

Ciliated cells	75 NX
Lung	75 NX

Club cells	38 NX
Lung	38 NX

Collecting duct cells	54 NX
Kidney	54 NX

Cone photoreceptor cells	92 NX
Eye	92 NX

Cytotrophoblasts	162 NX
Placenta	162 NX

Distal tubular cells	196 NX
Kidney	196 NX

Ductal cells	97 NX
Pancreas	97 NX

Early spermatids	118 NX
Testis	118 NX

Endothelial cells	44 NX
Placenta	105 NX
Pancreas	68 NX
Eye	58 NX
Prostate	53 NX
Testis	51 NX
Lung	44 NX
Skin	41 NX
Heart muscle	33 NX
Liver	29 NX

Enterocytes	100 NX
Small intestine	107 NX
Colon	100 NX
Rectum	60 NX

Erythroid cells	70 NX
Liver	70 NX

Exocrine glandular cells	90 NX
Pancreas	90 NX

Extravillous trophoblasts	134 NX
Placenta	134 NX

Fibroblasts	47 NX
Placenta	91 NX
Prostate	51 NX
Lung	47 NX
Heart muscle	34 NX
Skin	32 NX

Glandular cells	56 NX
Prostate	56 NX

Granulocytes	38 NX
Lung	40 NX
Colon	37 NX

Hepatocytes	80 NX
Liver	80 NX

Hofbauer cells	132 NX
Placenta	132 NX

Horizontal cells	45 NX
Eye	45 NX

Intestinal endocrine cells	46 NX
Rectum	54 NX
Colon	37 NX

Ito cells	37 NX
Liver	37 NX

Kupffer cells	62 NX
Liver	62 NX

Late spermatids	335 NX
Testis	335 NX

Leydig cells	45 NX
Testis	45 NX

Macrophages	54 NX
Pancreas	145 NX
Kidney	78 NX
Prostate	61 NX
Testis	47 NX
Lung	45 NX
Skin	38 NX

Melanocytes	41 NX
Skin	41 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	135 NX
Pancreas	135 NX

Mucus-secreting cells	67 NX
Colon	101 NX
Rectum	68 NX
Small intestine	53 NX

Muller glia cells	64 NX
Eye	64 NX

Pancreatic endocrine cells	79 NX
Pancreas	79 NX

Paneth cells	63 NX
Rectum	82 NX
Small intestine	63 NX
Colon	43 NX

Peritubular cells	37 NX
Testis	37 NX

Proximal tubular cells	178 NX
Kidney	178 NX

Rod photoreceptor cells	100 NX
Eye	100 NX

Sertoli cells	58 NX
Testis	58 NX

Smooth muscle cells	55 NX
Pancreas	137 NX
Prostate	59 NX
Heart muscle	55 NX
Skin	51 NX

Spermatocytes	64 NX
Testis	64 NX

Spermatogonia	74 NX
Testis	74 NX

Suprabasal keratinocytes	37 NX
Skin	37 NX

Syncytiotrophoblasts	115 NX
Placenta	115 NX

T-cells	61 NX
Kidney	80 NX
Colon	63 NX
Liver	62 NX
Prostate	48 NX
Skin	45 NX
Lung	42 NX

Undifferentiated cells	107 NX
Colon	160 NX
Rectum	107 NX
Small intestine	98 NX

Urothelial cells	67 NX
Prostate	67 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.