Cell type atlas - SOCS2 - The Human Protein Atlas

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SOCS2

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	SOCS2
Gene descriptionⁱ Full gene name according to HGNC.	Suppressor of cytokine signaling 2
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	12

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (monocytes, Ito cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (basophil)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (CACO-2, K-562, REH, THP-1)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (monocytes, Ito cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	9 NX
Lung	9 NX

Alveolar cells type 2	65 NX
Lung	65 NX

B-cells	0 NX
Liver	3 NX
Kidney	0 NX
Colon	0 NX

Basal glandular cells	43 NX
Prostate	43 NX

Basal keratinocytes	16 NX
Skin	16 NX

Bipolar cells	4 NX
Eye	4 NX

Cardiomyocytes	4 NX
Heart muscle	4 NX

Cholangiocytes	0 NX
Liver	0 NX

Ciliated cells	4 NX
Lung	4 NX

Club cells	32 NX
Lung	32 NX

Collecting duct cells	21 NX
Kidney	21 NX

Cone photoreceptor cells	4 NX
Eye	4 NX

Cytotrophoblasts	29 NX
Placenta	29 NX

Distal tubular cells	53 NX
Kidney	53 NX

Ductal cells	10 NX
Pancreas	10 NX

Early spermatids	7 NX
Testis	7 NX

Endothelial cells	47 NX
Skin	230 NX
Testis	207 NX
Prostate	123 NX
Lung	93 NX
Liver	45 NX
Heart muscle	39 NX
Placenta	34 NX
Eye	33 NX
Pancreas	22 NX

Enterocytes	16 NX
Rectum	23 NX
Small intestine	18 NX
Colon	11 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	33 NX
Pancreas	33 NX

Extravillous trophoblasts	5 NX
Placenta	5 NX

Fibroblasts	32 NX
Prostate	82 NX
Skin	38 NX
Placenta	35 NX
Lung	27 NX
Heart muscle	15 NX

Glandular cells	114 NX
Prostate	114 NX

Granulocytes	23 NX
Lung	28 NX
Colon	18 NX

Hepatocytes	10 NX
Liver	10 NX

Hofbauer cells	11 NX
Placenta	11 NX

Horizontal cells	65 NX
Eye	65 NX

Intestinal endocrine cells	8 NX
Colon	14 NX
Rectum	2 NX

Ito cells	123 NX
Liver	123 NX

Kupffer cells	12 NX
Liver	12 NX

Late spermatids	15 NX
Testis	15 NX

Leydig cells	85 NX
Testis	85 NX

Macrophages	9 NX
Prostate	15 NX
Skin	15 NX
Lung	11 NX
Pancreas	7 NX
Kidney	3 NX
Testis	2 NX

Melanocytes	17 NX
Skin	17 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	188 NX
Pancreas	188 NX

Mucus-secreting cells	15 NX
Rectum	17 NX
Small intestine	12 NX
Colon	7 NX

Muller glia cells	1 NX
Eye	1 NX

Pancreatic endocrine cells	9 NX
Pancreas	9 NX

Paneth cells	18 NX
Rectum	23 NX
Small intestine	18 NX
Colon	17 NX

Peritubular cells	95 NX
Testis	95 NX

Proximal tubular cells	17 NX
Kidney	17 NX

Rod photoreceptor cells	1 NX
Eye	1 NX

Sertoli cells	78 NX
Testis	78 NX

Smooth muscle cells	40 NX
Prostate	81 NX
Skin	46 NX
Pancreas	31 NX
Heart muscle	7 NX

Spermatocytes	3 NX
Testis	3 NX

Spermatogonia	8 NX
Testis	8 NX

Suprabasal keratinocytes	9 NX
Skin	9 NX

Syncytiotrophoblasts	29 NX
Placenta	29 NX

T-cells	14 NX
Kidney	21 NX
Liver	16 NX
Skin	14 NX
Lung	12 NX
Prostate	9 NX
Colon	6 NX

Undifferentiated cells	16 NX
Rectum	20 NX
Small intestine	13 NX
Colon	9 NX

Urothelial cells	26 NX
Prostate	26 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.