Cell type atlas - ABCD4 - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

ABCD4

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ABCD4
Gene descriptionⁱ Full gene name according to HGNC.	ATP binding cassette subfamily D member 4
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Plasma proteins Potential drug targets Transporters
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	27 NX
Lung	27 NX

Alveolar cells type 2	15 NX
Lung	15 NX

B-cells	14 NX
Colon	24 NX
Kidney	13 NX
Liver	8 NX

Basal glandular cells	14 NX
Prostate	14 NX

Basal keratinocytes	14 NX
Skin	14 NX

Bipolar cells	46 NX
Eye	46 NX

Cardiomyocytes	8 NX
Heart muscle	8 NX

Cholangiocytes	23 NX
Liver	23 NX

Ciliated cells	15 NX
Lung	15 NX

Club cells	17 NX
Lung	17 NX

Collecting duct cells	19 NX
Kidney	19 NX

Cone photoreceptor cells	61 NX
Eye	61 NX

Cytotrophoblasts	44 NX
Placenta	44 NX

Distal tubular cells	8 NX
Kidney	8 NX

Ductal cells	21 NX
Pancreas	21 NX

Early spermatids	10 NX
Testis	10 NX

Endothelial cells	46 NX
Skin	80 NX
Placenta	60 NX
Testis	49 NX
Prostate	46 NX
Heart muscle	39 NX
Pancreas	39 NX
Eye	26 NX
Liver	25 NX
Lung	23 NX

Enterocytes	29 NX
Small intestine	50 NX
Rectum	35 NX
Colon	20 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	10 NX
Pancreas	10 NX

Extravillous trophoblasts	16 NX
Placenta	16 NX

Fibroblasts	24 NX
Placenta	27 NX
Skin	25 NX
Heart muscle	19 NX
Prostate	17 NX
Lung	14 NX

Glandular cells	11 NX
Prostate	11 NX

Granulocytes	20 NX
Lung	21 NX
Colon	18 NX

Hepatocytes	20 NX
Liver	20 NX

Hofbauer cells	42 NX
Placenta	42 NX

Horizontal cells	30 NX
Eye	30 NX

Intestinal endocrine cells	12 NX
Colon	14 NX
Rectum	9 NX

Ito cells	34 NX
Liver	34 NX

Kupffer cells	16 NX
Liver	16 NX

Late spermatids	6 NX
Testis	6 NX

Leydig cells	37 NX
Testis	37 NX

Macrophages	20 NX
Testis	24 NX
Skin	23 NX
Prostate	20 NX
Lung	17 NX
Pancreas	16 NX
Kidney	9 NX

Melanocytes	20 NX
Skin	20 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	26 NX
Pancreas	26 NX

Mucus-secreting cells	18 NX
Small intestine	22 NX
Rectum	19 NX
Colon	5 NX

Muller glia cells	43 NX
Eye	43 NX

Pancreatic endocrine cells	15 NX
Pancreas	15 NX

Paneth cells	23 NX
Small intestine	25 NX
Rectum	23 NX
Colon	6 NX

Peritubular cells	24 NX
Testis	24 NX

Proximal tubular cells	18 NX
Kidney	18 NX

Rod photoreceptor cells	57 NX
Eye	57 NX

Sertoli cells	32 NX
Testis	32 NX

Smooth muscle cells	15 NX
Heart muscle	22 NX
Skin	18 NX
Pancreas	14 NX
Prostate	10 NX

Spermatocytes	32 NX
Testis	32 NX

Spermatogonia	22 NX
Testis	22 NX

Suprabasal keratinocytes	9 NX
Skin	9 NX

Syncytiotrophoblasts	24 NX
Placenta	24 NX

T-cells	30 NX
Lung	40 NX
Skin	34 NX
Liver	30 NX
Kidney	27 NX
Colon	24 NX
Prostate	18 NX

Undifferentiated cells	21 NX
Small intestine	29 NX
Rectum	21 NX
Colon	13 NX

Urothelial cells	14 NX
Prostate	14 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.