Cell type atlas - EBNA1BP2 - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

EBNA1BP2

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	EBNA1BP2
Gene descriptionⁱ Full gene name according to HGNC.	EBNA1 binding protein 2
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	33 NX
Lung	33 NX

Alveolar cells type 2	33 NX
Lung	33 NX

B-cells	27 NX
Liver	64 NX
Kidney	31 NX
Colon	22 NX

Basal glandular cells	69 NX
Prostate	69 NX

Basal keratinocytes	109 NX
Skin	109 NX

Bipolar cells	25 NX
Eye	25 NX

Cardiomyocytes	29 NX
Heart muscle	29 NX

Cholangiocytes	56 NX
Liver	56 NX

Ciliated cells	87 NX
Lung	87 NX

Club cells	49 NX
Lung	49 NX

Collecting duct cells	30 NX
Kidney	30 NX

Cone photoreceptor cells	6 NX
Eye	6 NX

Cytotrophoblasts	95 NX
Placenta	95 NX

Distal tubular cells	76 NX
Kidney	76 NX

Ductal cells	100 NX
Pancreas	100 NX

Early spermatids	110 NX
Testis	110 NX

Endothelial cells	37 NX
Pancreas	158 NX
Placenta	66 NX
Prostate	57 NX
Lung	41 NX
Testis	37 NX
Skin	34 NX
Liver	27 NX
Heart muscle	26 NX
Eye	22 NX

Enterocytes	23 NX
Small intestine	24 NX
Rectum	24 NX
Colon	19 NX

Erythroid cells	70 NX
Liver	70 NX

Exocrine glandular cells	107 NX
Pancreas	107 NX

Extravillous trophoblasts	112 NX
Placenta	112 NX

Fibroblasts	53 NX
Lung	109 NX
Prostate	69 NX
Placenta	62 NX
Heart muscle	41 NX
Skin	34 NX

Glandular cells	58 NX
Prostate	58 NX

Granulocytes	50 NX
Colon	55 NX
Lung	44 NX

Hepatocytes	127 NX
Liver	127 NX

Hofbauer cells	58 NX
Placenta	58 NX

Horizontal cells	14 NX
Eye	14 NX

Intestinal endocrine cells	23 NX
Rectum	33 NX
Colon	14 NX

Ito cells	33 NX
Liver	33 NX

Kupffer cells	23 NX
Liver	23 NX

Late spermatids	71 NX
Testis	71 NX

Leydig cells	31 NX
Testis	31 NX

Macrophages	31 NX
Pancreas	63 NX
Kidney	52 NX
Lung	35 NX
Testis	30 NX
Skin	22 NX
Prostate	15 NX

Melanocytes	52 NX
Skin	52 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	54 NX
Pancreas	54 NX

Mucus-secreting cells	38 NX
Colon	63 NX
Rectum	38 NX
Small intestine	30 NX

Muller glia cells	44 NX
Eye	44 NX

Pancreatic endocrine cells	101 NX
Pancreas	101 NX

Paneth cells	12 NX
Rectum	48 NX
Colon	12 NX
Small intestine	11 NX

Peritubular cells	36 NX
Testis	36 NX

Proximal tubular cells	101 NX
Kidney	101 NX

Rod photoreceptor cells	22 NX
Eye	22 NX

Sertoli cells	39 NX
Testis	39 NX

Smooth muscle cells	55 NX
Pancreas	178 NX
Prostate	58 NX
Skin	52 NX
Heart muscle	24 NX

Spermatocytes	80 NX
Testis	80 NX

Spermatogonia	104 NX
Testis	104 NX

Suprabasal keratinocytes	87 NX
Skin	87 NX

Syncytiotrophoblasts	71 NX
Placenta	71 NX

T-cells	24 NX
Lung	43 NX
Kidney	34 NX
Colon	28 NX
Skin	21 NX
Liver	19 NX
Prostate	9 NX

Undifferentiated cells	60 NX
Colon	70 NX
Rectum	59 NX
Small intestine	53 NX

Urothelial cells	77 NX
Prostate	77 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.