Cell type atlas - TCIRG1 - The Human Protein Atlas

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TCIRG1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TCIRG1
Gene descriptionⁱ Full gene name according to HGNC.	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	6

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Kupffer cells, Hofbauer cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (HMC-1, RPMI-8226)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Kupffer cells, Hofbauer cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	27 NX
Lung	27 NX

Alveolar cells type 2	66 NX
Lung	66 NX

B-cells	29 NX
Colon	58 NX
Liver	20 NX
Kidney	18 NX

Basal glandular cells	12 NX
Prostate	12 NX

Basal keratinocytes	6 NX
Skin	6 NX

Bipolar cells	1 NX
Eye	1 NX

Cardiomyocytes	1 NX
Heart muscle	1 NX

Cholangiocytes	18 NX
Liver	18 NX

Ciliated cells	29 NX
Lung	29 NX

Club cells	27 NX
Lung	27 NX

Collecting duct cells	7 NX
Kidney	7 NX

Cone photoreceptor cells	0 NX
Eye	0 NX

Cytotrophoblasts	18 NX
Placenta	18 NX

Distal tubular cells	0 NX
Kidney	0 NX

Ductal cells	30 NX
Pancreas	30 NX

Early spermatids	0 NX
Testis	0 NX

Endothelial cells	16 NX
Lung	32 NX
Eye	22 NX
Pancreas	22 NX
Skin	16 NX
Liver	16 NX
Prostate	14 NX
Testis	14 NX
Placenta	14 NX
Heart muscle	13 NX

Enterocytes	46 NX
Colon	94 NX
Small intestine	38 NX
Rectum	37 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	59 NX
Pancreas	59 NX

Extravillous trophoblasts	46 NX
Placenta	46 NX

Fibroblasts	20 NX
Placenta	23 NX
Lung	22 NX
Prostate	12 NX
Skin	12 NX
Heart muscle	4 NX

Glandular cells	9 NX
Prostate	9 NX

Granulocytes	49 NX
Lung	51 NX
Colon	46 NX

Hepatocytes	16 NX
Liver	16 NX

Hofbauer cells	103 NX
Placenta	103 NX

Horizontal cells	0 NX
Eye	0 NX

Intestinal endocrine cells	23 NX
Colon	27 NX
Rectum	19 NX

Ito cells	18 NX
Liver	18 NX

Kupffer cells	128 NX
Liver	128 NX

Late spermatids	0 NX
Testis	0 NX

Leydig cells	6 NX
Testis	6 NX

Macrophages	82 NX
Pancreas	292 NX
Lung	143 NX
Kidney	124 NX
Testis	60 NX
Prostate	41 NX
Skin	24 NX

Melanocytes	5 NX
Skin	5 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	47 NX
Pancreas	47 NX

Mucus-secreting cells	25 NX
Colon	39 NX
Small intestine	24 NX
Rectum	21 NX

Muller glia cells	1 NX
Eye	1 NX

Pancreatic endocrine cells	45 NX
Pancreas	45 NX

Paneth cells	88 NX
Colon	109 NX
Small intestine	88 NX
Rectum	34 NX

Peritubular cells	12 NX
Testis	12 NX

Proximal tubular cells	2 NX
Kidney	2 NX

Rod photoreceptor cells	1 NX
Eye	1 NX

Sertoli cells	39 NX
Testis	39 NX

Smooth muscle cells	17 NX
Pancreas	35 NX
Skin	17 NX
Prostate	11 NX
Heart muscle	9 NX

Spermatocytes	0 NX
Testis	0 NX

Spermatogonia	3 NX
Testis	3 NX

Suprabasal keratinocytes	5 NX
Skin	5 NX

Syncytiotrophoblasts	22 NX
Placenta	22 NX

T-cells	49 NX
Lung	73 NX
Liver	66 NX
Colon	49 NX
Kidney	42 NX
Skin	27 NX
Prostate	9 NX

Undifferentiated cells	25 NX
Colon	40 NX
Small intestine	28 NX
Rectum	25 NX

Urothelial cells	17 NX
Prostate	17 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.