Cell type atlas - RPS13 - The Human Protein Atlas

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RPS13

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	RPS13
Gene descriptionⁱ Full gene name according to HGNC.	Ribosomal protein S13
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Plasma proteins Ribosomal proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	861 NX
Lung	861 NX

Alveolar cells type 2	1324 NX
Lung	1324 NX

B-cells	3859 NX
Kidney	4576 NX
Liver	3859 NX
Colon	1232 NX

Basal glandular cells	3661 NX
Prostate	3661 NX

Basal keratinocytes	4057 NX
Skin	4057 NX

Bipolar cells	256 NX
Eye	256 NX

Cardiomyocytes	721 NX
Heart muscle	721 NX

Cholangiocytes	1865 NX
Liver	1865 NX

Ciliated cells	1103 NX
Lung	1103 NX

Club cells	1633 NX
Lung	1633 NX

Collecting duct cells	632 NX
Kidney	632 NX

Cone photoreceptor cells	98 NX
Eye	98 NX

Cytotrophoblasts	3330 NX
Placenta	3330 NX

Distal tubular cells	2470 NX
Kidney	2470 NX

Ductal cells	1793 NX
Pancreas	1793 NX

Early spermatids	1053 NX
Testis	1053 NX

Endothelial cells	2297 NX
Prostate	3746 NX
Skin	3362 NX
Liver	2551 NX
Testis	2450 NX
Placenta	2297 NX
Pancreas	1447 NX
Lung	1205 NX
Eye	856 NX
Heart muscle	413 NX

Enterocytes	956 NX
Small intestine	1394 NX
Rectum	775 NX
Colon	763 NX

Erythroid cells	818 NX
Liver	818 NX

Exocrine glandular cells	3950 NX
Pancreas	3950 NX

Extravillous trophoblasts	4558 NX
Placenta	4558 NX

Fibroblasts	2409 NX
Lung	2875 NX
Skin	2517 NX
Placenta	2338 NX
Prostate	2147 NX
Heart muscle	573 NX

Glandular cells	2958 NX
Prostate	2958 NX

Granulocytes	1430 NX
Lung	2079 NX
Colon	781 NX

Hepatocytes	1827 NX
Liver	1827 NX

Hofbauer cells	2531 NX
Placenta	2531 NX

Horizontal cells	86 NX
Eye	86 NX

Intestinal endocrine cells	1317 NX
Rectum	1734 NX
Colon	901 NX

Ito cells	1934 NX
Liver	1934 NX

Kupffer cells	3782 NX
Liver	3782 NX

Late spermatids	1415 NX
Testis	1415 NX

Leydig cells	3289 NX
Testis	3289 NX

Macrophages	3756 NX
Skin	4026 NX
Prostate	4015 NX
Kidney	3764 NX
Testis	3750 NX
Lung	2174 NX
Pancreas	1231 NX

Melanocytes	2068 NX
Skin	2068 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	3015 NX
Pancreas	3015 NX

Mucus-secreting cells	2387 NX
Rectum	4191 NX
Colon	1851 NX
Small intestine	1808 NX

Muller glia cells	600 NX
Eye	600 NX

Pancreatic endocrine cells	2990 NX
Pancreas	2990 NX

Paneth cells	2143 NX
Rectum	3131 NX
Small intestine	2143 NX
Colon	1060 NX

Peritubular cells	1668 NX
Testis	1668 NX

Proximal tubular cells	2743 NX
Kidney	2743 NX

Rod photoreceptor cells	321 NX
Eye	320 NX

Sertoli cells	860 NX
Testis	860 NX

Smooth muscle cells	2531 NX
Skin	3063 NX
Prostate	2531 NX
Pancreas	2179 NX
Heart muscle	464 NX

Spermatocytes	433 NX
Testis	433 NX

Spermatogonia	317 NX
Testis	317 NX

Suprabasal keratinocytes	4762 NX
Skin	4762 NX

Syncytiotrophoblasts	3754 NX
Placenta	3754 NX

T-cells	2537 NX
Skin	3791 NX
Kidney	3747 NX
Prostate	3151 NX
Liver	2223 NX
Lung	2029 NX
Colon	1034 NX

Undifferentiated cells	3057 NX
Rectum	3649 NX
Small intestine	3320 NX
Colon	1303 NX

Urothelial cells	3744 NX
Prostate	3744 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.