Cell type atlas - STK3 - The Human Protein Atlas

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STK3

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	STK3
Gene descriptionⁱ Full gene name according to HGNC.	Serine/threonine kinase 3
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Early spermatids)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (A-431)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Early spermatids)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	36 NX
Lung	36 NX

Alveolar cells type 2	32 NX
Lung	32 NX

B-cells	5 NX
Colon	7 NX
Kidney	5 NX
Liver	2 NX

Basal glandular cells	39 NX
Prostate	39 NX

Basal keratinocytes	39 NX
Skin	39 NX

Bipolar cells	6 NX
Eye	6 NX

Cardiomyocytes	15 NX
Heart muscle	15 NX

Cholangiocytes	23 NX
Liver	23 NX

Ciliated cells	34 NX
Lung	34 NX

Club cells	42 NX
Lung	42 NX

Collecting duct cells	28 NX
Kidney	28 NX

Cone photoreceptor cells	14 NX
Eye	14 NX

Cytotrophoblasts	37 NX
Placenta	37 NX

Distal tubular cells	20 NX
Kidney	20 NX

Ductal cells	17 NX
Pancreas	17 NX

Early spermatids	119 NX
Testis	119 NX

Endothelial cells	30 NX
Prostate	63 NX
Heart muscle	47 NX
Lung	38 NX
Skin	32 NX
Testis	28 NX
Eye	19 NX
Placenta	19 NX
Pancreas	18 NX
Liver	16 NX

Enterocytes	18 NX
Small intestine	27 NX
Colon	11 NX
Rectum	9 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	17 NX
Pancreas	17 NX

Extravillous trophoblasts	49 NX
Placenta	49 NX

Fibroblasts	41 NX
Prostate	61 NX
Skin	49 NX
Lung	42 NX
Heart muscle	41 NX
Placenta	28 NX

Glandular cells	38 NX
Prostate	38 NX

Granulocytes	16 NX
Lung	23 NX
Colon	9 NX

Hepatocytes	18 NX
Liver	18 NX

Hofbauer cells	16 NX
Placenta	16 NX

Horizontal cells	10 NX
Eye	10 NX

Intestinal endocrine cells	9 NX
Rectum	14 NX
Colon	3 NX

Ito cells	22 NX
Liver	22 NX

Kupffer cells	15 NX
Liver	15 NX

Late spermatids	64 NX
Testis	64 NX

Leydig cells	84 NX
Testis	84 NX

Macrophages	20 NX
Lung	36 NX
Testis	33 NX
Skin	19 NX
Prostate	17 NX
Kidney	12 NX
Pancreas	9 NX

Melanocytes	24 NX
Skin	24 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	7 NX
Pancreas	7 NX

Mucus-secreting cells	8 NX
Small intestine	12 NX
Rectum	7 NX
Colon	4 NX

Muller glia cells	15 NX
Eye	15 NX

Pancreatic endocrine cells	20 NX
Pancreas	20 NX

Paneth cells	10 NX
Small intestine	18 NX
Rectum	10 NX
Colon	9 NX

Peritubular cells	70 NX
Testis	70 NX

Proximal tubular cells	20 NX
Kidney	20 NX

Rod photoreceptor cells	14 NX
Eye	14 NX

Sertoli cells	39 NX
Testis	39 NX

Smooth muscle cells	40 NX
Prostate	77 NX
Heart muscle	45 NX
Skin	34 NX
Pancreas	16 NX

Spermatocytes	17 NX
Testis	17 NX

Spermatogonia	12 NX
Testis	12 NX

Suprabasal keratinocytes	35 NX
Skin	35 NX

Syncytiotrophoblasts	54 NX
Placenta	54 NX

T-cells	8 NX
Lung	13 NX
Prostate	13 NX
Skin	10 NX
Kidney	8 NX
Colon	3 NX
Liver	2 NX

Undifferentiated cells	9 NX
Small intestine	21 NX
Colon	10 NX
Rectum	8 NX

Urothelial cells	31 NX
Prostate	31 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.