Cell type atlas - SGSM3 - The Human Protein Atlas

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SGSM3

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	SGSM3
Gene descriptionⁱ Full gene name according to HGNC.	Small G protein signaling modulator 3
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Transporters
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Mucus-secreting cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Mucus-secreting cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	3 NX
Lung	3 NX

Alveolar cells type 2	10 NX
Lung	10 NX

B-cells	25 NX
Colon	34 NX
Liver	25 NX
Kidney	13 NX

Basal glandular cells	26 NX
Prostate	26 NX

Basal keratinocytes	10 NX
Skin	10 NX

Bipolar cells	54 NX
Eye	54 NX

Cardiomyocytes	8 NX
Heart muscle	8 NX

Cholangiocytes	23 NX
Liver	23 NX

Ciliated cells	4 NX
Lung	4 NX

Club cells	7 NX
Lung	7 NX

Collecting duct cells	7 NX
Kidney	7 NX

Cone photoreceptor cells	18 NX
Eye	18 NX

Cytotrophoblasts	37 NX
Placenta	37 NX

Distal tubular cells	2 NX
Kidney	2 NX

Ductal cells	16 NX
Pancreas	16 NX

Early spermatids	14 NX
Testis	14 NX

Endothelial cells	15 NX
Placenta	24 NX
Testis	23 NX
Pancreas	22 NX
Liver	16 NX
Prostate	15 NX
Skin	15 NX
Eye	14 NX
Heart muscle	8 NX
Lung	6 NX

Enterocytes	35 NX
Colon	53 NX
Rectum	34 NX
Small intestine	29 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	40 NX
Pancreas	40 NX

Extravillous trophoblasts	44 NX
Placenta	44 NX

Fibroblasts	14 NX
Placenta	32 NX
Skin	13 NX
Prostate	13 NX
Heart muscle	11 NX
Lung	1 NX

Glandular cells	58 NX
Prostate	58 NX

Granulocytes	16 NX
Colon	28 NX
Lung	5 NX

Hepatocytes	18 NX
Liver	18 NX

Hofbauer cells	21 NX
Placenta	21 NX

Horizontal cells	25 NX
Eye	25 NX

Intestinal endocrine cells	30 NX
Rectum	40 NX
Colon	20 NX

Ito cells	18 NX
Liver	18 NX

Kupffer cells	18 NX
Liver	18 NX

Late spermatids	24 NX
Testis	24 NX

Leydig cells	21 NX
Testis	21 NX

Macrophages	8 NX
Pancreas	19 NX
Testis	16 NX
Skin	10 NX
Kidney	7 NX
Prostate	5 NX
Lung	5 NX

Melanocytes	15 NX
Skin	15 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	23 NX
Pancreas	23 NX

Mucus-secreting cells	124 NX
Colon	174 NX
Small intestine	107 NX
Rectum	80 NX

Muller glia cells	12 NX
Eye	12 NX

Pancreatic endocrine cells	22 NX
Pancreas	22 NX

Paneth cells	47 NX
Small intestine	56 NX
Rectum	47 NX
Colon	9 NX

Peritubular cells	18 NX
Testis	18 NX

Proximal tubular cells	4 NX
Kidney	4 NX

Rod photoreceptor cells	31 NX
Eye	31 NX

Sertoli cells	39 NX
Testis	39 NX

Smooth muscle cells	18 NX
Pancreas	19 NX
Prostate	18 NX
Skin	17 NX
Heart muscle	16 NX

Spermatocytes	46 NX
Testis	46 NX

Spermatogonia	26 NX
Testis	26 NX

Suprabasal keratinocytes	9 NX
Skin	9 NX

Syncytiotrophoblasts	38 NX
Placenta	38 NX

T-cells	20 NX
Skin	23 NX
Liver	20 NX
Colon	18 NX
Prostate	9 NX
Kidney	8 NX
Lung	4 NX

Undifferentiated cells	41 NX
Rectum	49 NX
Colon	44 NX
Small intestine	32 NX

Urothelial cells	55 NX
Prostate	55 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.