Cell type atlas - GSK3B - The Human Protein Atlas

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GSK3B

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	GSK3B
Gene descriptionⁱ Full gene name according to HGNC.	Glycogen synthase kinase 3 beta
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Enzymes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	2

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Horizontal cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Horizontal cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	30 NX
Lung	30 NX

Alveolar cells type 2	26 NX
Lung	26 NX

B-cells	17 NX
Liver	29 NX
Colon	18 NX
Kidney	13 NX

Basal glandular cells	27 NX
Prostate	27 NX

Basal keratinocytes	45 NX
Skin	45 NX

Bipolar cells	58 NX
Eye	58 NX

Cardiomyocytes	35 NX
Heart muscle	35 NX

Cholangiocytes	18 NX
Liver	18 NX

Ciliated cells	13 NX
Lung	13 NX

Club cells	17 NX
Lung	17 NX

Collecting duct cells	17 NX
Kidney	17 NX

Cone photoreceptor cells	57 NX
Eye	57 NX

Cytotrophoblasts	22 NX
Placenta	22 NX

Distal tubular cells	10 NX
Kidney	10 NX

Ductal cells	22 NX
Pancreas	22 NX

Early spermatids	114 NX
Testis	114 NX

Endothelial cells	22 NX
Prostate	42 NX
Placenta	28 NX
Skin	26 NX
Heart muscle	26 NX
Eye	22 NX
Pancreas	22 NX
Liver	20 NX
Testis	17 NX
Lung	12 NX

Enterocytes	32 NX
Colon	37 NX
Small intestine	31 NX
Rectum	27 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	28 NX
Pancreas	28 NX

Extravillous trophoblasts	43 NX
Placenta	43 NX

Fibroblasts	23 NX
Skin	25 NX
Prostate	25 NX
Heart muscle	24 NX
Lung	19 NX
Placenta	17 NX

Glandular cells	25 NX
Prostate	25 NX

Granulocytes	17 NX
Colon	28 NX
Lung	7 NX

Hepatocytes	20 NX
Liver	20 NX

Hofbauer cells	19 NX
Placenta	19 NX

Horizontal cells	135 NX
Eye	135 NX

Intestinal endocrine cells	26 NX
Colon	31 NX
Rectum	21 NX

Ito cells	24 NX
Liver	24 NX

Kupffer cells	28 NX
Liver	28 NX

Late spermatids	40 NX
Testis	40 NX

Leydig cells	12 NX
Testis	12 NX

Macrophages	23 NX
Prostate	29 NX
Testis	28 NX
Skin	25 NX
Pancreas	23 NX
Kidney	20 NX
Lung	18 NX

Melanocytes	34 NX
Skin	34 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	24 NX
Pancreas	24 NX

Mucus-secreting cells	23 NX
Colon	24 NX
Rectum	22 NX
Small intestine	16 NX

Muller glia cells	28 NX
Eye	28 NX

Pancreatic endocrine cells	35 NX
Pancreas	35 NX

Paneth cells	23 NX
Rectum	23 NX
Colon	23 NX
Small intestine	18 NX

Peritubular cells	19 NX
Testis	19 NX

Proximal tubular cells	12 NX
Kidney	12 NX

Rod photoreceptor cells	40 NX
Eye	40 NX

Sertoli cells	13 NX
Testis	13 NX

Smooth muscle cells	20 NX
Pancreas	26 NX
Prostate	20 NX
Skin	19 NX
Heart muscle	15 NX

Spermatocytes	34 NX
Testis	34 NX

Spermatogonia	23 NX
Testis	23 NX

Suprabasal keratinocytes	36 NX
Skin	36 NX

Syncytiotrophoblasts	36 NX
Placenta	36 NX

T-cells	24 NX
Colon	31 NX
Liver	31 NX
Skin	24 NX
Lung	23 NX
Prostate	22 NX
Kidney	20 NX

Undifferentiated cells	20 NX
Small intestine	24 NX
Colon	24 NX
Rectum	19 NX

Urothelial cells	36 NX
Prostate	36 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.