Cell type atlas - TNS1 - The Human Protein Atlas

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TNS1

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TNS1
Gene descriptionⁱ Full gene name according to HGNC.	Tensin 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	15

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Peritubular cells, Sertoli cells, Cardiomyocytes, Smooth muscle cells)
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (intermediate monocyte)
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Cell line enhanced (ASC diff, ASC TERT1, fHDF/TERT166, REH, TIME)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Peritubular cells, Sertoli cells, Cardiomyocytes, Smooth muscle cells)

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	161 NX
Lung	161 NX

Alveolar cells type 2	82 NX
Lung	82 NX

B-cells	5 NX
Liver	11 NX
Colon	2 NX
Kidney	0 NX

Basal glandular cells	46 NX
Prostate	46 NX

Basal keratinocytes	14 NX
Skin	14 NX

Bipolar cells	3 NX
Eye	3 NX

Cardiomyocytes	300 NX
Heart muscle	300 NX

Cholangiocytes	33 NX
Liver	33 NX

Ciliated cells	20 NX
Lung	20 NX

Club cells	36 NX
Lung	36 NX

Collecting duct cells	14 NX
Kidney	14 NX

Cone photoreceptor cells	0 NX
Eye	0 NX

Cytotrophoblasts	8 NX
Placenta	8 NX

Distal tubular cells	7 NX
Kidney	7 NX

Ductal cells	34 NX
Pancreas	34 NX

Early spermatids	2 NX
Testis	2 NX

Endothelial cells	55 NX
Heart muscle	183 NX
Liver	173 NX
Eye	112 NX
Lung	61 NX
Testis	55 NX
Skin	48 NX
Pancreas	47 NX
Prostate	34 NX
Placenta	29 NX

Enterocytes	0 NX
Rectum	0 NX
Colon	0 NX
Small intestine	0 NX

Erythroid cells	117 NX
Liver	117 NX

Exocrine glandular cells	17 NX
Pancreas	17 NX

Extravillous trophoblasts	1 NX
Placenta	1 NX

Fibroblasts	42 NX
Heart muscle	126 NX
Prostate	83 NX
Skin	47 NX
Placenta	35 NX
Lung	18 NX

Glandular cells	9 NX
Prostate	9 NX

Granulocytes	29 NX
Lung	40 NX
Colon	18 NX

Hepatocytes	29 NX
Liver	29 NX

Hofbauer cells	13 NX
Placenta	13 NX

Horizontal cells	40 NX
Eye	40 NX

Intestinal endocrine cells	0 NX
Rectum	0 NX
Colon	0 NX

Ito cells	74 NX
Liver	74 NX

Kupffer cells	15 NX
Liver	15 NX

Late spermatids	4 NX
Testis	4 NX

Leydig cells	157 NX
Testis	157 NX

Macrophages	15 NX
Lung	18 NX
Skin	18 NX
Testis	16 NX
Prostate	14 NX
Pancreas	5 NX
Kidney	3 NX

Melanocytes	10 NX
Skin	10 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	0 NX
Pancreas	0 NX

Mucus-secreting cells	0 NX
Rectum	0 NX
Small intestine	0 NX
Colon	0 NX

Muller glia cells	13 NX
Eye	13 NX

Pancreatic endocrine cells	17 NX
Pancreas	17 NX

Paneth cells	0 NX
Rectum	0 NX
Colon	0 NX
Small intestine	0 NX

Peritubular cells	474 NX
Testis	474 NX

Proximal tubular cells	21 NX
Kidney	21 NX

Rod photoreceptor cells	1 NX
Eye	1 NX

Sertoli cells	362 NX
Testis	362 NX

Smooth muscle cells	208 NX
Heart muscle	466 NX
Prostate	208 NX
Skin	202 NX
Pancreas	59 NX

Spermatocytes	1 NX
Testis	1 NX

Spermatogonia	2 NX
Testis	2 NX

Suprabasal keratinocytes	10 NX
Skin	10 NX

Syncytiotrophoblasts	2 NX
Placenta	2 NX

T-cells	5 NX
Prostate	18 NX
Lung	12 NX
Skin	11 NX
Kidney	5 NX
Liver	3 NX
Colon	0 NX

Undifferentiated cells	0 NX
Rectum	0 NX
Small intestine	0 NX
Colon	0 NX

Urothelial cells	15 NX
Prostate	15 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.