Cell type atlas - U2AF2 - The Human Protein Atlas

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U2AF2

SUMMARY

TISSUE

CELL TYPE

PATHOLOGY

BRAIN

BLOOD

CELL

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	U2AF2
Gene descriptionⁱ Full gene name according to HGNC.	U2 small nuclear RNA auxiliary factor 2
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Blood cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines.	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines.	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUESⁱ Single cell RNA in cell types from tissue are shown separately for each analyzed tissue. For easier navigation across tissues, use the grey browser on the left side of the window. Barchart shows pTPM levels in each cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ RNA expression data (NX) of tissue culture cell lines.The analyzed cell lines are divided into 16 color-coded groups according to the organ they were obtained from. Detailed information about a specific cell line is revealed by hovering over the corresponding bar in the chart. The chart is clickable and redirects to more Cell Atlas data. Read more
Organ Expression Alphabetical

Alveolar cells type 1	3 NX
Lung	3 NX

Alveolar cells type 2	8 NX
Lung	8 NX

B-cells	30 NX
Kidney	40 NX
Colon	24 NX
Liver	18 NX

Basal glandular cells	35 NX
Prostate	35 NX

Basal keratinocytes	40 NX
Skin	40 NX

Bipolar cells	39 NX
Eye	39 NX

Cardiomyocytes	2 NX
Heart muscle	2 NX

Cholangiocytes	28 NX
Liver	28 NX

Ciliated cells	3 NX
Lung	3 NX

Club cells	10 NX
Lung	10 NX

Collecting duct cells	26 NX
Kidney	26 NX

Cone photoreceptor cells	30 NX
Eye	30 NX

Cytotrophoblasts	50 NX
Placenta	50 NX

Distal tubular cells	17 NX
Kidney	17 NX

Ductal cells	27 NX
Pancreas	27 NX

Early spermatids	4 NX
Testis	4 NX

Endothelial cells	25 NX
Pancreas	54 NX
Liver	47 NX
Placenta	41 NX
Prostate	38 NX
Testis	31 NX
Skin	24 NX
Eye	18 NX
Lung	3 NX
Heart muscle	2 NX

Enterocytes	37 NX
Colon	42 NX
Rectum	37 NX
Small intestine	27 NX

Erythroid cells	0 NX
Liver	0 NX

Exocrine glandular cells	21 NX
Pancreas	21 NX

Extravillous trophoblasts	50 NX
Placenta	50 NX

Fibroblasts	29 NX
Placenta	36 NX
Prostate	34 NX
Skin	22 NX
Lung	14 NX
Heart muscle	3 NX

Glandular cells	27 NX
Prostate	27 NX

Granulocytes	35 NX
Colon	55 NX
Lung	14 NX

Hepatocytes	25 NX
Liver	25 NX

Hofbauer cells	33 NX
Placenta	33 NX

Horizontal cells	33 NX
Eye	33 NX

Intestinal endocrine cells	44 NX
Colon	48 NX
Rectum	40 NX

Ito cells	25 NX
Liver	25 NX

Kupffer cells	23 NX
Liver	23 NX

Late spermatids	5 NX
Testis	5 NX

Leydig cells	41 NX
Testis	41 NX

Macrophages	28 NX
Testis	38 NX
Skin	29 NX
Kidney	29 NX
Pancreas	28 NX
Prostate	22 NX
Lung	10 NX

Melanocytes	19 NX
Skin	19 NX

Mixed cell types	NX
Pancreas	NX

Mixed immune cells	NX
Heart muscle	NX

Monocytes	40 NX
Pancreas	40 NX

Mucus-secreting cells	39 NX
Rectum	39 NX
Colon	38 NX
Small intestine	36 NX

Muller glia cells	24 NX
Eye	24 NX

Pancreatic endocrine cells	25 NX
Pancreas	24 NX

Paneth cells	21 NX
Rectum	41 NX
Small intestine	21 NX
Colon	17 NX

Peritubular cells	32 NX
Testis	32 NX

Proximal tubular cells	20 NX
Kidney	20 NX

Rod photoreceptor cells	50 NX
Eye	50 NX

Sertoli cells	0 NX
Testis	0 NX

Smooth muscle cells	32 NX
Pancreas	38 NX
Prostate	32 NX
Skin	32 NX
Heart muscle	2 NX

Spermatocytes	23 NX
Testis	23 NX

Spermatogonia	29 NX
Testis	29 NX

Suprabasal keratinocytes	34 NX
Skin	34 NX

Syncytiotrophoblasts	60 NX
Placenta	60 NX

T-cells	34 NX
Prostate	44 NX
Kidney	39 NX
Skin	34 NX
Colon	34 NX
Liver	32 NX
Lung	12 NX

Undifferentiated cells	38 NX
Colon	41 NX
Small intestine	40 NX
Rectum	35 NX

Urothelial cells	39 NX
Prostate	39 NX

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.