Consensus dataset Consensus normalized expression (NX) levels for 55 tissue types and 6 blood cell types, created by combining the data from the three transcriptomics datasets (HPA, GTEx and FANTOM5). Color-coding is based on tissue groups, each consisting of tissues with functional features in common. To access sample data, click on tissue name or bar.
Read more about how the datasets were combined into consensus normalized expression levels in Assays & Annotation.
Single cell typei
A summary of single cell RNA (NX) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
HPA blood dataset
HPA cell linesi
The cell lines in the Human Protein Atlas have been analyzed by RNA-seq to estimate the transcript abundance of each protein-coding gene. The RNA-seq data was then used to classify all genes according to their cell line-specific expression into one of six different categories, defined based on the total set of all TPM values in all analyzed cell lines.
RNA SAMPLE SUMMARYi
The RNA summary section shows normal distribution of individual samples across the datasets of multiple RNA-seq analyses visualized with box plots shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range.Hold mouse pointer over tissue/cell type/cell line to see sample numbers. Click on the cancer type to see cancer type sample information.